INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KJ617393 | Streptococcus phage SOCP | 19347 | 38.823 | Streptococcus | Group I | Cepunavirus | Cepunavirus | Unclassified | Madridviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae | Complete | High-quality | 100.000 | ITR (high-confidence) | Cepunavirus | Cepunavirus Cp1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KJ619459 | Affertcholeramvirus CTXphi | 6446 | 44.307 | Unspecified | Group II | Affertcholeramvirus | Affertcholeramvirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae IB4755 | Medium-quality | Genome-fragment | 86.100 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KJ621082 | Dinoroseobacter phage DFL12phi1 | 75028 | 49.260 | Dinoroseobacter | Group I | Baltimorevirus | Baltimorevirus | Rhodovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dinoroseobacter shibae DFL12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Baltimorevirus | Baltimorevirus DFL12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KJ628499 | Acinetobacter phage vB_AbaM_phiAbaA1 | 104906 | 37.774 | Acinetobacter | Group I | Saclayvirus | Saclayvirus | Unclassified | Luriaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii Acb8/09 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Wulsvirus | Wulsvirus Rocket | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KJ668713 | Escherichia phage e4/1c | 47112 | 44.078 | Escherichia | Group I | Rogunavirus | Rogunavirus | Rogunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rogunavirus | Rogunavirus E41c | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KJ668714 | Escherichia phage vB_EcoM_112 | 168470 | 35.275 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus e112 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KJ668715 | Listeria phage LMTA-34 | 113482 | 36.363 | Listeria | Group I | Pecentumvirus | Pecentumvirus | Jasinskavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | Medium-quality | Genome-fragment | 82.210 | AAI-based (high-confidence) | Pecentumvirus | Pecentumvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KJ676859 | Bacillus phage JBP901 | 159492 | 39.658 | Bacillus | Group I | Caeruleovirus | Caeruleovirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus ATCC 14579 | High-quality | High-quality | 99.880 | AAI-based (high-confidence) | Caeruleovirus | Caeruleovirus JBP901 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KJ690250 | Mycobacterium phage Pinto | 50610 | 63.533 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.460 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;immunity orf_67 |
| KJ716334 | Staphylococcus phage SA97 | 40592 | 34.246 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RN4220 | High-quality | High-quality | 94.280 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus SA97 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_12;integrase orf_44;antirepressor orf_51 |