Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KJ617393Streptococcus phage SOCP1934738.823StreptococcusGroup I CepunavirusCepunavirusUnclassifiedMadridviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniaeCompleteHigh-quality100.000ITR (high-confidence) CepunavirusCepunavirus Cp1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ619459Affertcholeramvirus CTXphi644644.307UnspecifiedGroup II AffertcholeramvirusAffertcholeramvirusUnclassifiedInoviridaeTubulaviralesFaserviricetesHofneiviricotaLoebviraeFloreoviria Vibrio cholerae IB4755Medium-qualityGenome-fragment86.100AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
KJ621082Dinoroseobacter phage DFL12phi17502849.260DinoroseobacterGroup I BaltimorevirusBaltimorevirusRhodovirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Dinoroseobacter shibae DFL12High-qualityHigh-quality100.000AAI-based (high-confidence) BaltimorevirusBaltimorevirus DFL12Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ628499Acinetobacter phage vB_AbaM_phiAbaA110490637.774AcinetobacterGroup I SaclayvirusSaclayvirusUnclassifiedLuriaviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Acinetobacter baumannii Acb8/09High-qualityHigh-quality100.000AAI-based (high-confidence) WulsvirusWulsvirus RocketCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ668713Escherichia phage e4/1c4711244.078EscherichiaGroup I RogunavirusRogunavirusRogunavirinaeDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality100.000AAI-based (high-confidence) RogunavirusRogunavirus E41cCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ668714Escherichia phage vB_EcoM_11216847035.275EscherichiaGroup I TequatrovirusTequatrovirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality100.000AAI-based (high-confidence) TequatrovirusTequatrovirus e112Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ668715Listeria phage LMTA-3411348236.363ListeriaGroup I PecentumvirusPecentumvirusJasinskavirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Listeria monocytogenesMedium-qualityGenome-fragment82.210AAI-based (high-confidence) PecentumvirusPecentumvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ676859Bacillus phage JBP90115949239.658BacillusGroup I CaeruleovirusCaeruleovirusBastillevirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus cereus ATCC 14579High-qualityHigh-quality99.880AAI-based (high-confidence) CaeruleovirusCaeruleovirus JBP901Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ690250Mycobacterium phage Pinto5061063.533MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality97.460AAI-based (high-confidence) FromanvirusFromanvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_36;immunity orf_67
KJ716334Staphylococcus phage SA974059234.246StaphylococcusGroup I DubowvirusDubowvirusAzeredovirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus aureus RN4220High-qualityHigh-quality94.280AAI-based (high-confidence) DubowvirusDubowvirus SA97The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_12;integrase orf_44;antirepressor orf_51
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