INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KJ586794	Listeria phage LMTA-34	138036	35.870	Listeria	Group I	Pecentumvirus	Pecentumvirus	Jasinskavirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pecentumvirus	Pecentumvirus LMSP25	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ586795	Listeria phage LMTA-94	136468	35.841	Listeria	Group I	Pecentumvirus	Pecentumvirus	Jasinskavirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	High-quality	High-quality	98.860	AAI-based (high-confidence)	Pecentumvirus	Pecentumvirus LMSP25	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ591604	Listeria phage LMTA-148	132541	36.027	Listeria	Group I	Pecentumvirus	Pecentumvirus	Jasinskavirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	High-quality	High-quality	96.020	AAI-based (high-confidence)	Pecentumvirus	Pecentumvirus LMTA148	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_96
KJ591605	Listeria phage LMTA-57	136589	35.848	Listeria	Group I	Pecentumvirus	Pecentumvirus	Jasinskavirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	High-quality	High-quality	98.950	AAI-based (high-confidence)	Pecentumvirus	Pecentumvirus LMSP25	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ595575	Mycobacterium phage Willis	155476	64.724	Mycobacterium	Group I	Bixzunavirus	Bixzunavirus	Ceeclamvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.450	AAI-based (high-confidence)	Bixzunavirus	Bixzunavirus quasimodo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ595576	Mycobacterium phage Manad	68807	66.431	Mycobacterium	Group I	Pegunavirus	Pegunavirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.040	AAI-based (high-confidence)	Pegunavirus	Pegunavirus manad	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ596420	Staphylococcus phage phiSa119	42600	33.404	Staphylococcus	Group I	Biseptimavirus	Biseptimavirus	Bronfenbrennervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus Sau119	High-quality	High-quality	100.000	AAI-based (high-confidence)	Biseptimavirus	Biseptimavirus P1105	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_7;cro orf_8;antirepressor orf_9;integrase orf_40
KJ603229	Shigella phage POCJ13	62699	49.347	Shigella	Group I	Diegovirus	Diegovirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Shigella flexneri 2a	High-quality	High-quality	95.490	AAI-based (high-confidence)	Diegovirus	Diegovirus POCJ13	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;antirepressor orf_26;antirepressor orf_44;antirepressor orf_75;antirepressor orf_76
KJ608188	Enterococcus phage EFC-1	40286	35.047	Enterococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis	High-quality	High-quality	98.380	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_58
KJ608189	Leuconostoc phage LLC-1	50014	39.365	Leuconostoc	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_19;cro orf_22;antirepressor orf_23;integrase orf_61