INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KM101122 | Mycobacterium phage Hades | 54986 | 61.396 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacteruim smegmatis mc2 155 | High-quality | High-quality | 95.530 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus hades | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_41;immunity orf_43 |
| KM101123 | Mycobacterium phage Minerva | 109871 | 60.745 | Mycobacterium | Group I | Omegavirus | Omegavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.030 | AAI-based (high-confidence) | Omegavirus | Omegavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_80 |
| KM101124 | Mycobacterium phage Squirty | 60285 | 62.405 | Mycobacterium | Group I | Squirtyvirus | Squirtyvirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacteruim smegmatis mc2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Squirtyvirus | Squirtyvirus squirty | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_32;integrase orf_33;immunity orf_36;cro orf_37;antirepressor orf_38 |
| KM190144 | Escherichia phage Av-05 | 120938 | 40.044 | Escherichia | Group I | Avunavirus | Avunavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 | High-quality | High-quality | 95.490 | AAI-based (high-confidence) | Avunavirus | Avunavirus Av05 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KM197169 | Mycobacterium phage Piro94 | 52647 | 63.419 | Mycobacterium | Group I | Turbidovirus | Turbidovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Turbidovirus | Turbidovirus piro94 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_70 |
| KM199770 | Rhizobium phage vB_RleM_P10VF | 156446 | 49.877 | Rhizobium | Group I | Innesvirus | Innesvirus | Unclassified | Pootjesviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium leguminosarum biovar viciae VF39 | Complete | High-quality | 100.000 | DTR (high-confidence) | Innesvirus | Innesvirus P10VF | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM199771 | Mesorhizobium phage vB_MloP_Lo5R7ANS | 45718 | 61.053 | Mesorhizobium | Group I | Pairvirus | Pairvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mesorhizobium loti R7ANS | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pairvirus | Pairvirus Lo5R7ANS | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_13 |
| KM209228 | Dickeya phage phiD3 | 152308 | 49.357 | Dickeya | Group I | Limestonevirus | Limestonevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. and Dickeya sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | Limestonevirus | Limestonevirus limestone | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KM209270 | Dickeya phage phiDP10.3 | 129650 | 49.766 | Dickeya | Group I | Aglimvirinae | Unclassified | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. and Dickeya sp. | Medium-quality | Genome-fragment | 82.100 | AAI-based (high-confidence) | Limestonevirus | Limestonevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KM209271 | Dickeya phage phiDP10.3 | 27033 | 48.530 | Dickeya | Group I | Aglimvirinae | Unclassified | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. and Dickeya sp. | Low-quality | Genome-fragment | 17.120 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic |