INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KF381361 | Sinorhizobium phage phiM12 | 194701 | 49.013 | Sinorhizobium | Group I | Emdodecavirus | Emdodecavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium meliloti | High-quality | High-quality | 98.630 | AAI-based (high-confidence) | Emdodecavirus | Emdodecavirus M12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_114 |
| KF416340 | Mycobacterium phage Wheeler | 53588 | 63.316 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;immunity orf_68 |
| KF416341 | Mycobacterium phage Phelemich | 70115 | 68.252 | Mycobacterium | Group I | Acadianvirus | Acadianvirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.870 | AAI-based (high-confidence) | Acadianvirus | Acadianvirus reprobate | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF416342 | Mycobacterium phage Papyrus | 70657 | 55.977 | Mycobacterium | Group I | Papyrusvirus | Papyrusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.470 | AAI-based (high-confidence) | Papyrusvirus | Papyrusvirus papyrus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF416343 | Mycobacterium phage Goku | 76483 | 62.830 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus eureka | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_48;immunity orf_51 |
| KF416344 | Mycobacterium phage Adzzy | 52519 | 62.556 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.820 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_30;antirepressor orf_71;immunity orf_74 |
| KF475786 | Pseudomonas phage MP48 | 36838 | 64.091 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PA14 | High-quality | High-quality | 96.130 | AAI-based (high-confidence) | Casadabanvirus | Casadabanvirus MP48 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_1;integrase orf_5 |
| KF493879 | Mycobacterium phage Bernardo | 68196 | 67.428 | Mycobacterium | Group I | Pipefishvirus | Pipefishvirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.700 | AAI-based (high-confidence) | Pipefishvirus | Pipefishvirus bernardo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF493880 | Mycobacterium phage HanShotFirst | 52390 | 63.814 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_35;immunity orf_71 |
| KF493881 | Mycobacterium phage JAMaL | 70841 | 68.751 | Mycobacterium | Group I | Coopervirus | Coopervirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Coopervirus | Coopervirus JAMaL | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |