INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KF302035 | Pseudoalteromonas phage HS6 | 35330 | 44.874 | Pseudoalteromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas sp. str. H100 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_49 |
| KF302036 | Pseudoalteromonas phage HS2 | 38208 | 40.232 | Pseudoalteromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas sp. str. H100 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KF302037 | Pseudoalteromonas phage HP1 | 45035 | 44.665 | Pseudoalteromonas | Group I | Melvirus | Melvirus | Unclassified | Zobellviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas sp. str. H100 | Complete | High-quality | 100.000 | DTR (high-confidence) | Melvirus | Melvirus helgolandense | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF306380 | Mycobacterium phage DrDrey | 77367 | 63.000 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_51;immunity orf_54 |
| KF319020 | Proteus phage PM16 | 41268 | 41.386 | Proteus | Group I | Novosibovirus | Novosibovirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus mirabilis 73 | Complete | High-quality | 100.000 | DTR (high-confidence) | Novosibovirus | Novosibovirus PM16 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF322026 | Vibrio phage phi-A318 | 42544 | 43.470 | Vibrio | Group I | Kaohsiungvirus | Kaohsiungvirus | Colwellvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio alginolyticus | High-quality | High-quality | 95.990 | AAI-based (high-confidence) | Kaohsiungvirus | Kaohsiungvirus A318 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF322032 | Enterobacteria phage fiAA91-ss | 33628 | 51.906 | Enterobacteria | Group I | Peduovirus | Peduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Peduovirus | Peduovirus fiAA91ss | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29;immunity orf_30 |
| KF356198 | Anabaena phage A-4L | 41750 | 43.437 | Anabaena | Group I | Kozyakovvirus | Kozyakovvirus | Unclassified | Saffermanviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Anabaena variabilis | Complete | High-quality | 100.000 | DTR (high-confidence) | Kozyakovvirus | Kozyakovvirus A4L | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF356199 | Microcystis phage MaMV-DC | 169223 | 46.032 | Microcystis | Group I | Fukuivirus | Fukuivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microcystis aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fukuivirus | Fukuivirus MVDC | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_9;integrase orf_185 |
| KF361475 | Vibrio phage VPUSM 8 | 34145 | 48.783 | Vibrio | Group I | Longwoodvirus | Longwoodvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae O1 El Tor Inaba | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Longwoodvirus | Longwoodvirus K139 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_2 |