INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KF493882	Mycobacterium phage Jovo	51319	60.771	Mycobacterium	Group I	Benedictvirus	Benedictvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Benedictvirus	Benedictvirus jovo	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_26;immunity orf_62
KF493883	Mycobacterium phage Mosby	74533	63.054	Mycobacterium	Group I	Kostyavirus	Kostyavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.880	AAI-based (high-confidence)	Kostyavirus	Kostyavirus CJW1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_47;immunity orf_50
KF534715	Pectobacterium phage PM1	55098	44.925	Pectobacterium	Group I	Suwonvirus	Suwonvirus	Cleopatravirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pectobacterium carotovorum subsp. carotovorum	Complete	High-quality	100.000	DTR (high-confidence)	Suwonvirus	Suwonvirus PM1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KF547926	Los Azufres archaeal virus 1	21184	45.015	Unspecified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unspecified	Not-determined	Genome-fragment			New_genus	New_species	No hits were found with the default settings	lytic
KF550303	Escherichia phage 4MG	148567	46.333	Escherichia	Group I	Seunavirus	Seunavirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K-12 subsr. MG1655	High-quality	High-quality	100.000	AAI-based (high-confidence)	Seunavirus	Seunavirus 4MG	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KF554508	Bacillus phage CP-51	138658	40.860	Bacillus	Group I	Siminovitchvirus	Siminovitchvirus	Spounavirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus HER1399	High-quality	High-quality	99.970	AAI-based (high-confidence)	Siminovitchvirus	Siminovitchvirus CP51	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KF560330	Mycobacterium phage Conspiracy	50755	60.615	Mycobacterium	Group I	Benedictvirus	Benedictvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Benedictvirus	Benedictvirus tiger	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_27;immunity orf_63
KF560331	Mycobacterium phage Graduation	52823	63.452	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_37;immunity orf_72
KF560332	Mycobacterium phage CloudWang3	52873	61.353	Mycobacterium	Group I	Gladiatorvirus	Gladiatorvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gladiatorvirus	Gladiatorvirus CloudWang3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	parA orf_31;immunity orf_68
KF560333	Mycobacterium phage Artemis2UCLA	52344	61.405	Mycobacterium	Group I	Gladiatorvirus	Gladiatorvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.680	AAI-based (high-confidence)	Gladiatorvirus	Gladiatorvirus zaka	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	parA orf_31;immunity orf_67