INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KC821612 | Cellulophaga phage phi40:1 | 72529 | 38.055 | Cellulophaga | Group I | Callevirus | Callevirus | Unclassified | Pervagoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica NN015840 | High-quality | High-quality | 99.700 | AAI-based (high-confidence) | Callevirus | Callevirus phi38una | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_64 |
| KC821613 | Cellulophaga phage phi12:1 | 39148 | 36.587 | Cellulophaga | Group I | Helsingorvirus | Helsingorvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica #12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Helsingorvirus | Helsingorvirus Cba121 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC821614 | Cellulophaga phage phi38:1 | 72534 | 38.055 | Cellulophaga | Group I | Callevirus | Callevirus | Unclassified | Pervagoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica NN016038 | High-quality | High-quality | 99.710 | AAI-based (high-confidence) | Callevirus | Callevirus phi38una | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_65 |
| KC821615 | Cellulophaga phage phi12:3 | 39151 | 36.584 | Cellulophaga | Group I | Helsingorvirus | Helsingorvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica #12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Helsingorvirus | Helsingorvirus Cba121 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC821616 | Cellulophaga phage phiSM | 54566 | 33.464 | Cellulophaga | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica MM#3 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KC821617 | Cellulophaga phage phi17:1 | 38776 | 36.476 | Cellulophaga | Group I | Helsingorvirus | Helsingorvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica #17 | High-quality | High-quality | 99.300 | AAI-based (high-confidence) | Helsingorvirus | Helsingorvirus Cba171 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC821618 | Cellulophaga phage phi10:1 | 53664 | 31.535 | Cellulophaga | Group I | Cebadecemvirus | Cebadecemvirus | Unclassified | Assiduviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica #10 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cebadecemvirus | Cebadecemvirus phi10una | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC821619 | Cellulophaga phage phi18:1 | 39189 | 36.515 | Cellulophaga | Group I | Helsingorvirus | Helsingorvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica #18 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Helsingorvirus | Helsingorvirus Cba181 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC821620 | Cellulophaga phage phi18:3 | 71443 | 32.884 | Cellulophaga | Group I | Baltivirus | Baltivirus | Unclassified | Pachyviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica #18 | High-quality | High-quality | 97.870 | AAI-based (high-confidence) | Baltivirus | Baltivirus phi18tres | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_34 |
| KC821621 | Cellulophaga phage phi19:2 | 78275 | 30.182 | Cellulophaga | Group I | Cbastvirus | Cbastvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica #19 | Complete | High-quality | 100.000 | DTR (high-confidence) | Cbastvirus | Cbastvirus ST | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |