INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KC787111 | Mycobacterium phage Sedge | 39869 | 66.229 | Mycobacterium | Group I | Liefievirus | Liefievirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium tuberculosis; Mycobacterium smegmatis | Complete | High-quality | 100.000 | DTR (high-confidence) | Liefievirus | Liefievirus liefie | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32 |
| KC787112 | Mycobacterium phage Clark | 38967 | 66.205 | Mycobacterium | Group I | Liefievirus | Liefievirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium tuberculosis; Mycobacterium smegmatis | High-quality | High-quality | 90.590 | AAI-based (high-confidence) | Liefievirus | Liefievirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC801932 | Escherichia phage Lw1 | 176227 | 43.491 | Escherichia | Group I | Pseudotevenvirus | Pseudotevenvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli BL21(DE3) | High-quality | High-quality | 98.860 | AAI-based (high-confidence) | Pseudotevenvirus | Pseudotevenvirus lw1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC814930 | Shigella phage SfIV | 39758 | 50.297 | Shigella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri serotype 4av | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_31;cro orf_39 |
| KC821604 | Cellulophaga phage phiST | 78269 | 30.183 | Cellulophaga | Group I | Cbastvirus | Cbastvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica MM#3 | Complete | High-quality | 100.000 | DTR (high-confidence) | Cbastvirus | Cbastvirus ST | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC821607 | Cellulophaga phage phi19:1 | 57447 | 31.239 | Cellulophaga | Group I | Cellubavirus | Cellubavirus | Unclassified | Assiduviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica #19 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cellubavirus | Cellubavirus phi19una | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC821608 | Cellulophaga phage phi19:3 | 75994 | 32.547 | Cellulophaga | Group I | Baltivirus | Baltivirus | Unclassified | Pachyviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica #19 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Baltivirus | Baltivirus phi19tres | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_36 |
| KC821609 | Cellulophaga phage phi17:2 | 145343 | 32.651 | Cellulophaga | Group I | Lightbulbvirus | Lightbulbvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica #17 | High-quality | High-quality | 99.640 | AAI-based (high-confidence) | Lightbulbvirus | Lightbulbvirus Cba172 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC821610 | Cellulophaga phage phi3ST:2 | 54015 | 33.470 | Cellulophaga | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica '#3 r phiST' | High-quality | High-quality | 98.990 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KC821611 | Cellulophaga phage phi46:1 | 34844 | 38.256 | Cellulophaga | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga baltica NN016046 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_21;integrase orf_46 |