INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KC481682 | Bacillus phage vB_BanS-Tsamsa | 168876 | 34.323 | Bacillus | Group I | Tsamsavirus | Tsamsavirus | Joanripponvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus anthracis | Complete | High-quality | 100.000 | DTR (high-confidence) | Tsamsavirus | Tsamsavirus tsamsa | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_11 |
| KC522412 | Lactococcus phage CaseusJM1 | 30692 | 34.836 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis subsp. cremoris | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Skunavirus | Skunavirus caseusJM1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC542353 | Pseudoalteromonas phage TW1 | 39940 | 40.188 | Pseudoalteromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas phenolica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KC556893 | Brucella phage Bk | 38253 | 48.174 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella melitensis | High-quality | High-quality | 93.390 | AAI-based (high-confidence) | Perisivirus | Perisivirus Pr | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC556894 | Brucella phage Fz | 41142 | 48.187 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella abortus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Perisivirus | Perisivirus Tb | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC556895 | Brucella phage R/C | 38253 | 48.179 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella canis | High-quality | High-quality | 93.390 | AAI-based (high-confidence) | Perisivirus | Perisivirus Pr | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC556896 | Brucella phage S708 | 38253 | 48.171 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella suis S708 | High-quality | High-quality | 93.390 | AAI-based (high-confidence) | Perisivirus | Perisivirus Pr | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC556897 | Brucella phage Tb | 41142 | 48.184 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella abortus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Perisivirus | Perisivirus Tb | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC556898 | Brucella phage Wb | 38253 | 48.171 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella abortus | High-quality | High-quality | 93.390 | AAI-based (high-confidence) | Perisivirus | Perisivirus Pr | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC576783 | Mycobacterium phage Butters | 41491 | 65.838 | Mycobacterium | Group I | Charlievirus | Charlievirus | Nclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.180 | AAI-based (high-confidence) | Charlievirus | Charlievirus butters | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;immunity orf_37 |