INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KC576784	Mycobacterium phage ShiVal	68355	66.498	Mycobacterium	Group I	Pegunavirus	Pegunavirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.390	AAI-based (high-confidence)	Pegunavirus	Pegunavirus Pg1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KC579452	Escherichia phage phiKP26	47285	44.257	Escherichia	Group I	Rogunavirus	Rogunavirus	Rogunavirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Oranienburg 190	High-quality	High-quality	100.000	AAI-based (high-confidence)	Rogunavirus	Rogunavirus KP26	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KC581799	Streptococcus phage phiD12	50470	39.633	Streptococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	95.270	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_1
KC595278	Staphylococcus phage StauST398-4	42906	33.084	Staphylococcus	Group I	Biseptimavirus	Biseptimavirus	Bronfenbrennervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Biseptimavirus	Biseptimavirus StauST3984	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_6;antirepressor orf_10;integrase orf_33
KC595279	Staphylococcus phage StauST398-5	43301	35.135	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phietavirus	Phietavirus StauST3985	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_2;cro orf_5;antirepressor orf_10;integrase orf_35
KC595511	Bacillus phage Basilisk	82008	33.906	Bacillus	Group I	Basiliskvirus	Basiliskvirus	Sejongvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus BGSC 6E1	Complete	High-quality	100.000	DTR (high-confidence)	Basiliskvirus	Basiliskvirus basilisk	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_98
KC595512	Bacillus phage JL	137918	40.802	Bacillus	Group I	Siminovitchvirus	Siminovitchvirus	Spounavirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus BGSC 6E1	High-quality	High-quality	99.440	AAI-based (high-confidence)	Siminovitchvirus	Siminovitchvirus JL	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KC595513	Bacillus phage Shanette	138877	40.770	Bacillus	Group I	Siminovitchvirus	Siminovitchvirus	Spounavirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus BGSC 6E1	High-quality	High-quality	100.000	AAI-based (high-confidence)	Siminovitchvirus	Siminovitchvirus shanette	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KC595514	Brevibacillus phage Jimmer2	54312	38.097	Brevibacillus	Group I	Jimmervirus	Jimmervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Brevibacillus laterosporus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jimmervirus	Jimmervirus jimmer	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_19;antirepressor orf_74
KC595515	Brevibacillus phage Jimmer1	54312	38.109	Brevibacillus	Group I	Jimmervirus	Jimmervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Brevibacillus laterosporus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jimmervirus	Jimmervirus jimmer	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_19;antirepressor orf_74