INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KC413988 | Streptococcus phage phiST1 | 38940 | 39.944 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus suis ST1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| KC430106 | Bacillus phage BPS10C | 159590 | 38.742 | Bacillus | Group I | Wphvirus | Wphvirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.690 | AAI-based (high-confidence) | Wphvirus | Wphvirus BPS10C | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KC438282 | Vibrio phage JA-1 | 69278 | 34.555 | Vibrio | Group I | Pacinivirus | Pacinivirus | Gaffkyvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pacinivirus | Pacinivirus VCO139 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_63 |
| KC438283 | Vibrio phage VCO139 | 68964 | 34.593 | Vibrio | Group I | Pacinivirus | Pacinivirus | Gaffkyvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pacinivirus | Pacinivirus VCO139 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_60 |
| KC460990 | Serratia phage Eta | 42724 | 49.913 | Serratia | Group I | Seretavirus | Seretavirus | Unclassified | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Seretavirus | Seretavirus eta | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC462197 | Burkholderia phage ST79 | 35430 | 62.501 | Burkholderia | Group I | Nampongvirus | Nampongvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pseudomallei | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | Nampongvirus | Nampongvirus ST79 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_8 |
| KC465898 | Pelagibacter phage HTVC010P | 34892 | 31.967 | Pelagibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter ubique HTCC1062 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KC465899 | Pelagibacter phage HTVC008M | 147284 | 33.448 | Pelagibacter | Group I | Kyanoviridae | Unclassified | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter ubique HTCC1062 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KC465900 | Pelagibacter phage HTVC011P | 39921 | 31.958 | Pelagibacter | Group I | Stopavirus | Stopavirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter ubique HTCC1062 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Stopavirus | Stopavirus HTVC011P | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_9 |
| KC465901 | Pelagibacter phage HTVC019P | 42084 | 34.046 | Pelagibacter | Group I | Pelagivirus | Pelagivirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter ubique HTCC1062 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pelagivirus | Pelagivirus HTVC019P | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_10 |