Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
JX483879Rhizobium phage RHEph084361949.435RhizobiumGroup I CuernavacavirusCuernavacavirusDunnvirinaeUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhizobium etli kim5High-qualityHigh-quality94.030AAI-based (high-confidence) CuernavacavirusCuernavacavirus RHEph08Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JX483880Rhizobium phage RHEph094596249.304RhizobiumGroup I CuernavacavirusCuernavacavirusDunnvirinaeUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhizobium etli kim5High-qualityHigh-quality99.080AAI-based (high-confidence) CuernavacavirusCuernavacavirus RHEph08Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JX483881Rhizobium phage RHEph1011504260.323RhizobiumGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhizobium etli CFN42High-qualityHigh-quality99.100AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
JX486087Lactobacillus phage ATCC80143800247.597LactobacillusGroup I CoetzeevirusCoetzeevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactiplantibacillus plantarum ATCC 8014High-qualityHigh-quality99.990AAI-based (high-confidence) CoetzeevirusCoetzeevirus ATCC8014The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
JX486088Lactobacillus phage ATCC 8014-B28061736.962LactobacillusGroup I DouglaswolinvirusDouglaswolinvirusTybeckvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactobacillus plantarum ATCC 8014High-qualityHigh-quality100.000AAI-based (high-confidence) DouglaswolinvirusDouglaswolinvirus B2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_39
JX495041Pseudomonas phage JD183901463.388PseudomonasGroup I MechnikovvirusMechnikovvirusGuarnerosvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality99.510AAI-based (high-confidence) MechnikovvirusMechnikovvirus JD18Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_13
JX495042Pseudomonas phage JBD253955262.535PseudomonasGroup I TorontovirusTorontovirusGuarnerosvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality100.000AAI-based (high-confidence) TorontovirusTorontovirus JBD25Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_14
JX495043Pseudomonas phage JBD673823263.018PseudomonasGroup I MechnikovvirusMechnikovvirusGuarnerosvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality97.560AAI-based (high-confidence) MechnikovvirusMechnikovvirus JBD67Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_13
JX501340Pseudomonas phage MPK74287462.138PseudomonasGroup I PhikmvvirusPhikmvvirusKrylovirinaeAutoscriptoviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosa PAO1High-qualityHigh-quality99.540AAI-based (high-confidence) PhikmvvirusPhikmvvirus MPK7Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JX507079Acidithiobacillus phage AcaML15936365.472AcidithiobacillusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Acidithiobacillus caldus ATCC 51756High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_2;integrase orf_3;antirepressor orf_11
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