INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JX483879 | Rhizobium phage RHEph08 | 43619 | 49.435 | Rhizobium | Group I | Cuernavacavirus | Cuernavacavirus | Dunnvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli kim5 | High-quality | High-quality | 94.030 | AAI-based (high-confidence) | Cuernavacavirus | Cuernavacavirus RHEph08 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JX483880 | Rhizobium phage RHEph09 | 45962 | 49.304 | Rhizobium | Group I | Cuernavacavirus | Cuernavacavirus | Dunnvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli kim5 | High-quality | High-quality | 99.080 | AAI-based (high-confidence) | Cuernavacavirus | Cuernavacavirus RHEph08 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JX483881 | Rhizobium phage RHEph10 | 115042 | 60.323 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli CFN42 | High-quality | High-quality | 99.100 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JX486087 | Lactobacillus phage ATCC8014 | 38002 | 47.597 | Lactobacillus | Group I | Coetzeevirus | Coetzeevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactiplantibacillus plantarum ATCC 8014 | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | Coetzeevirus | Coetzeevirus ATCC8014 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JX486088 | Lactobacillus phage ATCC 8014-B2 | 80617 | 36.962 | Lactobacillus | Group I | Douglaswolinvirus | Douglaswolinvirus | Tybeckvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus plantarum ATCC 8014 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Douglaswolinvirus | Douglaswolinvirus B2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_39 |
| JX495041 | Pseudomonas phage JD18 | 39014 | 63.388 | Pseudomonas | Group I | Mechnikovvirus | Mechnikovvirus | Guarnerosvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.510 | AAI-based (high-confidence) | Mechnikovvirus | Mechnikovvirus JD18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_13 |
| JX495042 | Pseudomonas phage JBD25 | 39552 | 62.535 | Pseudomonas | Group I | Torontovirus | Torontovirus | Guarnerosvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Torontovirus | Torontovirus JBD25 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_14 |
| JX495043 | Pseudomonas phage JBD67 | 38232 | 63.018 | Pseudomonas | Group I | Mechnikovvirus | Mechnikovvirus | Guarnerosvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.560 | AAI-based (high-confidence) | Mechnikovvirus | Mechnikovvirus JBD67 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_13 |
| JX501340 | Pseudomonas phage MPK7 | 42874 | 62.138 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | Phikmvvirus | Phikmvvirus MPK7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JX507079 | Acidithiobacillus phage AcaML1 | 59363 | 65.472 | Acidithiobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acidithiobacillus caldus ATCC 51756 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_2;integrase orf_3;antirepressor orf_11 |