INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
JX509734	Enterobacteria phage SfI	38389	50.116	Enterobacteria	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Shigella flexneri serotype 1a strain 019	High-quality	High-quality	97.010	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_27;cro orf_43;cro orf_44
JX536493	Escherichia phage HX01	169158	37.588	Escherichia	Group I	Mosigvirus	Mosigvirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli DM01	High-quality	High-quality	99.730	AAI-based (high-confidence)	Mosigvirus	Mosigvirus HX01	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX556417	Vibrio phage vB_VpaM_MAR	41351	51.336	Vibrio	Group I	Oonoonbavirus	Oonoonbavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	High-quality	High-quality	98.030	AAI-based (high-confidence)	Oonoonbavirus	Oonoonbavirus mar	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	parA orf_40
JX556418	Vibrio phage vB_VpaS_MAR10	78751	49.703	Vibrio	Group I	Mardecavirus	Mardecavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Mardecavirus	Mardecavirus MAR10	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
JX560521	Acinetobacter phage phiAC-1	43216	38.476	Acinetobacter	Group I	Solivirus	Solivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter soli KZ-1	High-quality	High-quality	100.000	AAI-based (high-confidence)	Solivirus	Solivirus phiAC1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX560968	Escherichia phage EC6	86231	38.898	Escherichia	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli serotype O157:H7	Complete	High-quality	100.000	DTR (high-confidence)	Felixounavirus	Felixounavirus EC6	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX561091	Escherichia phage phAPEC8	147737	39.148	Escherichia	Group I	Phapecoctavirus	Phapecoctavirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	97.470	AAI-based (high-confidence)	Phapecoctavirus	Phapecoctavirus phAPEC8	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX564242	Lactococcus phage Q33	31106	36.215	Lactococcus	Group I	Vedamuthuvirus	Vedamuthuvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis P335	High-quality	High-quality	100.000	AAI-based (high-confidence)	Vedamuthuvirus	Vedamuthuvirus Q33	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_2;antirepressor orf_4
JX567312	Lactococcus phage BM13	30910	35.988	Lactococcus	Group I	Vedamuthuvirus	Vedamuthuvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Vedamuthuvirus	Vedamuthuvirus BM13	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_2;antirepressor orf_3;antirepressor orf_5;antirepressor orf_8
JX569801	Campylobacter phage CP30A	133572	26.127	Campylobacter	Group I	Fletchervirus	Fletchervirus	Unclassified	Connertonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Campylobacter jejuni subsp. jejuni	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fletchervirus	Fletchervirus CP30A	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic