INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JX181824 | Salmonella phage SSE121 | 147745 | 45.292 | Salmonella | Group I | Seunavirus | Seunavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.940 | AAI-based (high-confidence) | Seunavirus | Seunavirus SSE121 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JX181825 | Salmonella phage STML-198 | 158099 | 36.888 | Salmonella | Group I | Gelderlandvirus | Gelderlandvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 94.010 | AAI-based (high-confidence) | Gelderlandvirus | Gelderlandvirus stml198 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JX181828 | Salmonella phage STML-13-1 | 157235 | 44.782 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.500 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus STML131 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JX181829 | Salmonella phage SKML-39 | 159624 | 50.154 | Salmonella | Group I | Agtrevirus | Agtrevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Agtrevirus | Agtrevirus SKML39 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JX182369 | Streptomyces phage phiHau3 | 50255 | 67.834 | Streptomyces | Group I | Hautrevirus | Hautrevirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces coelicolor A3(2) | High-quality | High-quality | 99.800 | AAI-based (high-confidence) | Hautrevirus | Hautrevirus hau3 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_51 |
| JX182370 | Streptomyces phage R4 | 51071 | 66.962 | Streptomyces | Group I | Arequatrovirus | Arequatrovirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces coelicolor A3(2) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Arequatrovirus | Arequatrovirus R4 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_28;integrase orf_50 |
| JX182371 | Streptomyces phage SV1 | 37612 | 72.692 | Streptomyces | Group I | Picardvirus | Picardvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces venezuelae | High-quality | High-quality | 98.080 | AAI-based (high-confidence) | Picardvirus | Picardvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_26;cro orf_29 |
| JX182372 | Streptomyces phage TG1 | 40474 | 64.649 | Streptomyces | Group I | Tigunavirus | Tigunavirus | Unclassified | Colingsworthviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces avermitilis | High-quality | High-quality | 98.330 | AAI-based (high-confidence) | Tigunavirus | Tigunavirus TG1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JX185431 | Dragonfly-associated microphage 1 | 4472 | 58.631 | Unspecified | Group II | Tramlacvirus | Tramlacvirus | Unclassified | Groupodiviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Tramea lacerata | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| JX193904 | Enterococcus phage EfaCPT1 | 40923 | 34.641 | Enterococcus | Group I | Efquatrovirus | Efquatrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Efquatrovirus | Efquatrovirus EfaCPT1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |