INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
JX126920	Listeria phage LP-037	64756	36.559	Listeria	Group I	Homburgvirus	Homburgvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	Homburgvirus	Homburgvirus LP37	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX128257	Escherichia phage ECML-4	157308	45.032	Escherichia	Group I	Kuttervirus	Kuttervirus	Cvivirinae	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	Complete	High-quality	100.000	DTR (high-confidence)	Kuttervirus	Kuttervirus ECML4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX128258	Escherichia phage ECML-117	66854	46.198	Escherichia	Group I	Wifcevirus	Wifcevirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	Complete	High-quality	100.000	DTR (high-confidence)	Wifcevirus	Wifcevirus ECML117	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX128259	Escherichia phage ECML-134	166783	35.411	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	99.130	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus ecml134	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX131330	Pseudomonas phage MP1412	61167	64.283	Pseudomonas	Group I	Yuavirus	Yuavirus	Rabinowitzvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PAO1	High-quality	High-quality	99.700	AAI-based (high-confidence)	Yuavirus	Yuavirus MP1412	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX145341	Clostridium phage phiMMP02	48396	29.552	Clostridium	Group I	Colneyvirus	Colneyvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridium difficile	High-quality	High-quality	96.600	AAI-based (high-confidence)	Colneyvirus	Colneyvirus MMP02	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_41;antirepressor orf_48
JX145342	Clostridium phage phiMMP04	31674	29.971	Clostridium	Group I	Sherbrookevirus	Sherbrookevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridium difficile	High-quality	High-quality	93.180	AAI-based (high-confidence)	Sherbrookevirus	Sherbrookevirus MMP04	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	parA orf_29;cro orf_35;integrase orf_44
JX163858	Caulobacter phage phiCbK	205504	66.105	Caulobacter	Group I	Shapirovirus	Shapirovirus	Unclassified	Jeanschmidtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Caulobacter crescentus CB15	Complete	High-quality	100.000	DTR (high-confidence)	Shapirovirus	Shapirovirus cbk	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_105;integrase orf_178
JX173487	Pseudomonas phage Phi-S1	40192	56.213	Pseudomonas	Group I	Pifdecavirus	Pifdecavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas fluorescens	High-quality	High-quality	99.610	AAI-based (high-confidence)	Pifdecavirus	Pifdecavirus PhiS1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX174275	Staphylococcus phage LH1	46048	33.191	Staphylococcus	Group I	Triavirus	Triavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	99.210	AAI-based (high-confidence)	Triavirus	Triavirus LH1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_27;cro orf_31;antirepressor orf_33;integrase orf_54