INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
JX100811	Caulobacter virus Karma	221828	66.207	Caulobacter	Group I	Shapirovirus	Shapirovirus	Unclassified	Jeanschmidtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Caulobacter crescentus	Complete	High-quality	100.000	DTR (high-confidence)	Shapirovirus	Shapirovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_9;integrase orf_141;integrase orf_191;cro orf_223;integrase orf_336
JX100812	Caulobacter virus Magneto	218929	66.150	Caulobacter	Group I	Shapirovirus	Shapirovirus	Unclassified	Jeanschmidtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Caulobacter crescentus	Complete	High-quality	100.000	DTR (high-confidence)	Shapirovirus	Shapirovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_9;integrase orf_137;cro orf_218;integrase orf_331
JX100813	Caulobacter phage phiCbK	215710	66.153	Caulobacter	Group I	Shapirovirus	Shapirovirus	Unclassified	Jeanschmidtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Caulobacter vibrioides	Complete	High-quality	100.000	DTR (high-confidence)	Shapirovirus	Shapirovirus cbk	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_8;integrase orf_140;cro orf_213;integrase orf_322
JX100814	Caulobacter phage CcrRogue	223720	66.105	Caulobacter	Group I	Poindextervirus	Poindextervirus	Unclassified	Jeanschmidtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Caulobacter vibrioides	Complete	High-quality	100.000	DTR (high-confidence)	Poindextervirus	Poindextervirus rogue	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_136
JX104231	Burkholderia phage BcepMigl	62952	65.505	Burkholderia	Group I	Lessievirus	Lessievirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Burkholderia cenocepacia	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lessievirus	Lessievirus bcepmigl	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_3
JX120799	Listeria phage LP-030-2	38275	34.751	Listeria	Group I	Psavirus	Psavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Psavirus	Psavirus LP302	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_26;cro orf_29
JX121091	Mycobacterium phage Taj	58550	61.863	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus taj	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_44;immunity orf_46
JX123262	Aeromonas phage CC2	231743	38.821	Aeromonas	Group I	Ceceduovirus	Ceceduovirus	Emmerichvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aeromonas hydrophila	High-quality	High-quality	97.850	AAI-based (high-confidence)	Ceceduovirus	Ceceduovirus cc2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX126918	Listeria phage LP-125	135281	35.930	Listeria	Group I	Pecentumvirus	Pecentumvirus	Jasinskavirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	Pecentumvirus	Pecentumvirus LP0832	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX126919	Listeria phage LP-110	65132	36.342	Listeria	Group I	Homburgvirus	Homburgvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	96.980	AAI-based (high-confidence)	Homburgvirus	Homburgvirus LP110	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic