INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JQ867100 | Marinomonas phage P12026 | 31766 | 46.603 | Marinomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Marinomonas sp. IMCC12026 | High-quality | High-quality | 98.010 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JQ896627 | Mycobacterium phage ICleared | 51440 | 63.861 | Mycobacterium | Group I | Backyardiganvirus | Backyardiganvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Backyardiganvirus | Backyardiganvirus icleared | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;immunity orf_63 |
| JQ911768 | Mycobacterium phage Ava3 | 154466 | 64.762 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.820 | AAI-based (high-confidence) | Bixzunavirus | Bixzunavirus quasimodo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ957925 | Yersinia phage Y | 37432 | 48.301 | Yersinia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Teseptimavirus | Teseptimavirus A1122 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ957932 | Staphylococcus phage StauST398-2 | 45572 | 33.341 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 98.180 | AAI-based (high-confidence) | Triavirus | Triavirus StauST3982 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_6;integrase orf_28 |
| JQ965645 | Salmonella phage SSU5 | 103299 | 51.105 | Salmonella | Group I | Suquintavirus | Suquintavirus | Santaclaravirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 | High-quality | High-quality | 95.420 | AAI-based (high-confidence) | Suquintavirus | Suquintavirus SSU5 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JQ965700 | Yersinia phage YpP-Y | 37714 | 48.348 | Yersinia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis | High-quality | High-quality | 94.550 | AAI-based (high-confidence) | Teseptimavirus | Teseptimavirus A1122 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ965701 | Yersinia phage YpP-R | 38284 | 48.339 | Yersinia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis | High-quality | High-quality | 95.990 | AAI-based (high-confidence) | Teseptimavirus | Teseptimavirus A1122 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ965702 | Yersinia phage YpP-G | 39415 | 47.238 | Yersinia | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis | High-quality | High-quality | 98.630 | AAI-based (high-confidence) | Berlinvirus | Berlinvirus berlin | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ965703 | Yersinia phage YpsP-G | 38288 | 48.221 | Yersinia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis | High-quality | High-quality | 96.000 | AAI-based (high-confidence) | Teseptimavirus | Teseptimavirus A1122 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |