INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
JQ806764	Salmonella phage vB_SosS_Oslo	49116	48.738	Salmonella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella serovar Winston	High-quality	High-quality	97.840	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_33;integrase orf_46;cro orf_53;cro orf_54
JQ809650	Celeribacter phage P12053L	38889	46.100	Celeribacter	Group I	Siovirus	Siovirus	Cobavirinae	Zobellviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Celeribacter sp. IMCC12053	High-quality	High-quality	97.420	AAI-based (high-confidence)	Siovirus	Siovirus coreense	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JQ809663	Stenotrophomonas phage Smp131	33525	65.023	Stenotrophomonas	Group I	Simpcentumvirus	Simpcentumvirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Stenotrophomonas maltophilia	High-quality	High-quality	100.000	AAI-based (high-confidence)	Simpcentumvirus	Simpcentumvirus Smp131	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_40
JQ809701	Mycobacterium phage Flux	51370	63.915	Mycobacterium	Group I	Backyardiganvirus	Backyardiganvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Backyardiganvirus	Backyardiganvirus peaches	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_63
JQ809702	Mycobacterium phage Avani	54470	60.973	Mycobacterium	Group I	Avanivirus	Avanivirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.230	AAI-based (high-confidence)	Avanivirus	Avanivirus avani	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_46;immunity orf_48;cro orf_49;antirepressor orf_50
JQ809703	Mycobacterium phage Aeneas	53684	63.587	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fromanvirus	Fromanvirus nepal	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_37;immunity orf_73
JQ823122	Nonlabens phage P12024S	35700	35.535	Nonlabens	Group I	Inhavirus	Inhavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Persicivirga sp. IMCC12024	High-quality	High-quality	100.000	AAI-based (high-confidence)	Inhavirus	Inhavirus P12024S	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JQ823123	Nonlabens phage P12024L	35652	35.875	Nonlabens	Group I	Inhavirus	Inhavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Persicivirga sp. IMCC12024	High-quality	High-quality	99.870	AAI-based (high-confidence)	Inhavirus	Inhavirus P12024L	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JQ837901	Pectobacterium phage PP1	44400	49.736	Pectobacterium	Group I	Axomammavirus	Axomammavirus	Molineuxvirinae	Autosignataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.590	AAI-based (high-confidence)	Axomammavirus	Axomammavirus PP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JQ867099	Croceibacter phage P2559S	44988	41.853	Croceibacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Croceibacter atlanticus HTCC2559	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic