INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
JQ966307	Escherichia phage MS2	3525	50.979	Escherichia	Group IV	Emesvirus	Emesvirus	Unclassified	Fiersviridae	Norzivirales	Leviviricetes	Lenarviricota	Orthornavirae	Riboviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	unknown
JQ973847	Staphylococcus phage StauST398-3	41392	35.599	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus 1	High-quality	High-quality	96.630	AAI-based (high-confidence)	Phietavirus	Phietavirus StauST3983	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_6;antirepressor orf_7;integrase orf_36
JX000007	Yersinia phage R	37260	48.360	Yersinia	Group I	Teseptimavirus	Teseptimavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pestis	High-quality	High-quality	93.410	AAI-based (high-confidence)	Teseptimavirus	Teseptimavirus A1122	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX006077	Saccharomonospora phage PIS 136	94870	65.881	Saccharomonospora	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Saccharomonospora sp.	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_114
JX013863	Staphylococcus phage StauST398-1	45242	34.464	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus 100	Complete	High-quality	100.000	DTR (high-confidence)	Phietavirus	Phietavirus StauST3981	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_2;integrase orf_33;antirepressor orf_58;antirepressor orf_62;cro orf_66
JX015524	Mycobacterium phage Astro	52494	61.380	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fromanvirus	Fromanvirus astro	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_28;immunity orf_81
JX042578	Mycobacterium phage ElTiger69	51505	59.784	Mycobacterium	Group I	Benedictvirus	Benedictvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Benedictvirus	Benedictvirus benedict	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_26;immunity orf_65
JX042579	Mycobacterium phage MacnCheese	61567	67.283	Mycobacterium	Group I	Keshuvirus	Keshuvirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Keshuvirus	Keshuvirus macncheese	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_43;immunity orf_46
JX080300	Staphylococcus phage Staph1N	145647	30.412	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus strain NCTC9789 (=PS80)	Complete	High-quality	100.000	DTR (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX080301	Staphylococcus phage A3R	141018	30.498	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus strain R19930	Complete	High-quality	100.000	DTR (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic