INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JQ086375 | Escherichia phage HK578 | 43741 | 54.484 | Escherichia | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 97.830 | AAI-based (high-confidence) | Dhillonvirus | Dhillonvirus HK578 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ086376 | Escherichia phage HK630 | 47090 | 50.053 | Escherichia | Group I | Lambdavirus | Lambdavirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lambdavirus | Lambdavirus HK630 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_28;cro orf_43;antirepressor orf_44 |
| JQ086377 | Escherichia phage HK633 | 41528 | 49.653 | Escherichia | Group I | Saikungvirus | Saikungvirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Saikungvirus | Saikungvirus HK633 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_24;cro orf_42;antirepressor orf_43 |
| JQ177061 | Vibrio phage CP-T1 | 44492 | 45.415 | Vibrio | Group I | Comeauvirus | Comeauvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae ElTor | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Comeauvirus | Comeauvirus CPT1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ177062 | Bdellovibrio phage phi1422 | 45354 | 44.294 | Bdellovibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bdellovibrio bacteriovorus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JQ177063 | Aeromonas phage vB_AsaM-56 | 43551 | 55.425 | Aeromonas | Group I | Popoffvirus | Popoffvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas salmonicida | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Popoffvirus | Popoffvirus pv56 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_48 |
| JQ177064 | Vibrio phage vB_VchM-138 | 44485 | 45.555 | Vibrio | Group I | Comeauvirus | Comeauvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | Comeauvirus | Comeauvirus cv138 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ177065 | Pectobacterium phage ZF40 | 48454 | 50.204 | Pectobacterium | Group I | Marchandvirus | Marchandvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium carotovorum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Marchandvirus | Marchandvirus ZF40 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_2 |
| JQ182726 | Escherichia phage mEpX2 | 38759 | 50.076 | Escherichia | Group I | Shamshuipovirus | Shamshuipovirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 97.640 | AAI-based (high-confidence) | Shamshuipovirus | Shamshuipovirus mEpX2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;cro orf_40;antirepressor orf_41 |
| JQ182727 | Escherichia phage mEpX1 | 41567 | 49.311 | Escherichia | Group I | Cuauhtlivirus | Cuauhtlivirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cuauhtlivirus | Cuauhtlivirus mEpX1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_26;antirepressor orf_43 |