INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JQ182728 | Enterobacteria phage mEp460 | 44510 | 50.874 | Enterobacteria | Group I | Limmatquaivirus | Limmatquaivirus | Wollmanvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 92.520 | AAI-based (high-confidence) | Limmatquaivirus | Limmatquaivirus mEp460 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_22;cro orf_35;antirepressor orf_38 |
| JQ182729 | Enterobacteria phage mEp390 | 40029 | 51.678 | Enterobacteria | Group I | Hendrixvirinae | Unclassified | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_27 |
| JQ182730 | Enterobacteria phage mEp237 | 44375 | 51.432 | Enterobacteria | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.410 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_28;antirepressor orf_40 |
| JQ182731 | Enterobacteria phage mEp235 | 37595 | 50.015 | Enterobacteria | Group I | Nochtlivirus | Nochtlivirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 96.750 | AAI-based (high-confidence) | Nochtlivirus | Nochtlivirus mEp235 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_25;cro orf_37;antirepressor orf_38 |
| JQ182732 | Escherichia phage mEp234 | 39578 | 49.586 | Escherichia | Group I | Wanchaivirus | Wanchaivirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.160 | AAI-based (high-confidence) | Wanchaivirus | Wanchaivirus mEp234 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_24;cro orf_38;antirepressor orf_39 |
| JQ182733 | Enterobacteria phage mEp213 | 44120 | 50.977 | Enterobacteria | Group I | Aguilavirus | Aguilavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Aguilavirus | Aguilavirus mEp213 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_24;antirepressor orf_50 |
| JQ182734 | Enterobacteria phage mEp043 c-1 | 42780 | 50.790 | Enterobacteria | Group I | Aguilavirus | Aguilavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.570 | AAI-based (high-confidence) | Aguilavirus | Aguilavirus mEp043 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_24;antirepressor orf_46 |
| JQ182735 | Escherichia phage HK629 | 47288 | 49.638 | Escherichia | Group I | Lambdavirus | Lambdavirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lambdavirus | Lambdavirus HK629 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_28;cro orf_44;antirepressor orf_45 |
| JQ182736 | Enterobacteria phage vB_EcoS_Rogue1 | 45805 | 44.214 | Enterobacteria | Group I | Rogunavirus | Rogunavirus | Rogunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.200 | AAI-based (high-confidence) | Rogunavirus | Rogunavirus rogue1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ245707 | Cyanophage S-TIM5 | 172474 | 40.942 | Synechococcus | Group I | Aurunvirus | Aurunvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Parasynechococcus marenigrum WH 8102 | Complete | High-quality | 100.000 | ITR (high-confidence) | Aurunvirus | Aurunvirus STIM5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |