INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
JQ067087	Pseudomonas phage PaMx11	59878	64.453	Pseudomonas	Group I	Abidjanvirus	Abidjanvirus	Bradleyvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	98.050	AAI-based (high-confidence)	Abidjanvirus	Abidjanvirus PaMx11	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JQ067089	Pseudomonas phage PaMx28	55108	66.406	Pseudomonas	Group I	Pamexvirus	Pamexvirus	Bradleyvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	Medium-quality	Genome-fragment	89.910	AAI-based (high-confidence)	Pamexvirus	Pamexvirus PaMx28	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JQ067092	Pseudomonas phage PaMx42	43225	54.635	Pseudomonas	Group I	Septimatrevirus	Septimatrevirus	Jondennisvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	100.000	AAI-based (high-confidence)	Septimatrevirus	Septimatrevirus samson	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JQ067093	Pseudomonas phage PaMx74	58637	68.382	Pseudomonas	Group I	Cinvestavvirus	Cinvestavvirus	Bradleyvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	95.460	AAI-based (high-confidence)	Cinvestavvirus	Cinvestavvirus PaMx74	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JQ086369	Escherichia phage HK106	41468	49.342	Escherichia	Group I	Wanchaivirus	Wanchaivirus	Hendrixvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Wanchaivirus	Wanchaivirus HK106	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;cro orf_43;antirepressor orf_44
JQ086370	Enterobacteria phage HK140	40710	49.912	Enterobacteria	Group I	Yautsimvirus	Yautsimvirus	Hendrixvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	Complete	High-quality	100.000	ITR (high-confidence)	Yautsimvirus	Yautsimvirus HK140	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_29;cro orf_49;antirepressor orf_50
JQ086371	Enterobacteria phage HK225	45366	51.955	Enterobacteria	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_30;antirepressor orf_45
JQ086372	Escherichia phage HK446	39026	50.102	Escherichia	Group I	Kwaitsingvirus	Kwaitsingvirus	Hendrixvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	97.880	AAI-based (high-confidence)	Kwaitsingvirus	Kwaitsingvirus HK446	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_24;cro orf_38;antirepressor orf_39
JQ086373	Escherichia phage HK542	38964	50.914	Escherichia	Group I	Wongtaivirus	Wongtaivirus	Hendrixvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	97.630	AAI-based (high-confidence)	Wongtaivirus	Wongtaivirus HK542	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_23;cro orf_35;cro orf_36
JQ086374	Escherichia phage HK544	40155	49.797	Escherichia	Group I	Kwaitsingvirus	Kwaitsingvirus	Hendrixvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kwaitsingvirus	Kwaitsingvirus HK544	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;cro orf_40;cro orf_41