INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
JQ010983	Thermococcus prieurii virus 1	21592	49.537	Thermococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Thermococcus sp. 'Bio pl 0405IT2'	Low-quality	Genome-fragment	1.810	HMM-based (lower-bound)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_12
JQ011316	Escherichia phage TL-2011a	24084	46.375	Escherichia	Group I	Sepvirinae	Unclassified	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O103:H25 strain NIPH-11060707/NVH-848	Low-quality	Genome-fragment	36.520	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	cro orf_22;cro orf_23;antirepressor orf_35
JQ011317	Escherichia phage TL-2011b	44784	47.053	Escherichia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O103:H25 strain NIPH-11060424/NVH-734	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_1;antirepressor orf_48
JQ011318	Escherichia phage TL-2011c	60523	50.297	Escherichia	Group I	Oslovirus	Oslovirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O103:H25 strain NIPH-11060424/NVH-734	High-quality	High-quality	91.800	AAI-based (high-confidence)	Oslovirus	Oslovirus TL2011	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;antirepressor orf_9;antirepressor orf_26;cro orf_29;cro orf_30
JQ015307	Pectobacterium phage phiTE	142349	50.137	Pectobacterium	Group I	Certrevirus	Certrevirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pectobacterium atrosepticum SCRI1043	High-quality	High-quality	97.390	AAI-based (high-confidence)	Certrevirus	Certrevirus phiTE	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
JQ031132	Escherichia phage FV3	136947	43.699	Escherichia	Group I	Vequintavirus	Vequintavirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	97.680	AAI-based (high-confidence)	Vequintavirus	Vequintavirus FV3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JQ062992	Bacillus phage phIS3501	44401	34.864	Bacillus	Group I	Camtrevirus	Camtrevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis var. israelensis ATCC 35646	High-quality	High-quality	100.000	AAI-based (high-confidence)	Camtrevirus	Camtrevirus S3501	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;antirepressor orf_11;integrase orf_28
JQ066768	Rhodobacter phage RcapNL	40489	65.112	Rhodobacter	Group I	Capnelvirus	Capnelvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodobacter capsulatus SB1003	Complete	High-quality	100.000	DTR (high-confidence)	Capnelvirus	Capnelvirus RcapNL	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_33
JQ067084	Pseudomonas phage PaMx25	57899	58.595	Pseudomonas	Group I	Nipunavirus	Nipunavirus	Queuovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	99.720	AAI-based (high-confidence)	Nipunavirus	Nipunavirus PaMx25	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JQ067085	Pseudomonas phage PaMx73	36570	64.192	Pseudomonas	Group I	Casadabanvirus	Casadabanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	95.580	AAI-based (high-confidence)	Casadabanvirus	Casadabanvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_1