Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
JN882298Escherichia phage phiKT4260851.589EscherichiaGroup I ErmolevavirusErmolevavirusUnclassifiedAutonotataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia sp.High-qualityHigh-quality99.910AAI-based (high-confidence) ErmolevavirusErmolevavirus PhiKTCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN939331Brucella phage Tb4114848.194BrucellaGroup I PerisivirusPerisivirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Brucella abortus 544High-qualityHigh-quality100.000AAI-based (high-confidence) PerisivirusPerisivirus TbCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN939332Brucella phage Pr3825348.182BrucellaGroup I PerisivirusPerisivirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Brucella melitensis 16MHigh-qualityHigh-quality93.390AAI-based (high-confidence) PerisivirusPerisivirus PrCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN968479Haloarcula hispanica icosahedral virus 23057866.515HaloarculaGroup I AlphasphaerolipovirusAlphasphaerolipovirusUnclassifiedSphaerolipoviridaeHalopaniviralesLaserviricetesDividoviricotaHelvetiaviraeSingelaviria Haloarcula hispanicaCompleteHigh-quality100.000ITR (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
JN984867Shigella phage EP234407754.421ShigellaGroup I DhillonvirusDhillonvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Shigella sonneiHigh-qualityHigh-quality98.570AAI-based (high-confidence) DhillonvirusDhillonvirus EP23Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN986844Escherichia phage vB_EcoP_ACG-C914373145.281EscherichiaGroup I VectrevirusVectrevirusMolineuxvirinaeAutosignataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality98.160AAI-based (high-confidence) VectrevirusVectrevirus ACGC91Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN986845Escherichia phage vB_EcoS_ACG-M124605443.512EscherichiaGroup I GuelphvirusGuelphvirusBraunvirinaeDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality100.000AAI-based (high-confidence) GuelphvirusGuelphvirus ACGM12The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
JN986846Escherichia phage vB_EcoM_ACG-C4016739635.237EscherichiaGroup I TequatrovirusTequatrovirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality99.530AAI-based (high-confidence) TequatrovirusTequatrovirus c40Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN991020Pseudomonas phage Bf74005858.405PseudomonasGroup I BifseptvirusBifseptvirusUnclassifiedAutonotataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas tolaasii LMG 2342CompleteHigh-quality100.000DTR (high-confidence) BifseptvirusBifseptvirus Bf7Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JQ007353Salmonella phage SE24322149.645SalmonellaGroup I JerseyvirusJerseyvirusGuernseyvirinaeSarkviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica serovar EnteritidisHigh-qualityHigh-quality100.000AAI-based (high-confidence) JerseyvirusJerseyvirus SE2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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