INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JN882298 | Escherichia phage phiKT | 42608 | 51.589 | Escherichia | Group I | Ermolevavirus | Ermolevavirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | High-quality | High-quality | 99.910 | AAI-based (high-confidence) | Ermolevavirus | Ermolevavirus PhiKT | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN939331 | Brucella phage Tb | 41148 | 48.194 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella abortus 544 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Perisivirus | Perisivirus Tb | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN939332 | Brucella phage Pr | 38253 | 48.182 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella melitensis 16M | High-quality | High-quality | 93.390 | AAI-based (high-confidence) | Perisivirus | Perisivirus Pr | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN968479 | Haloarcula hispanica icosahedral virus 2 | 30578 | 66.515 | Haloarcula | Group I | Alphasphaerolipovirus | Alphasphaerolipovirus | Unclassified | Sphaerolipoviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Haloarcula hispanica | Complete | High-quality | 100.000 | ITR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JN984867 | Shigella phage EP23 | 44077 | 54.421 | Shigella | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella sonnei | High-quality | High-quality | 98.570 | AAI-based (high-confidence) | Dhillonvirus | Dhillonvirus EP23 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN986844 | Escherichia phage vB_EcoP_ACG-C91 | 43731 | 45.281 | Escherichia | Group I | Vectrevirus | Vectrevirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.160 | AAI-based (high-confidence) | Vectrevirus | Vectrevirus ACGC91 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN986845 | Escherichia phage vB_EcoS_ACG-M12 | 46054 | 43.512 | Escherichia | Group I | Guelphvirus | Guelphvirus | Braunvirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Guelphvirus | Guelphvirus ACGM12 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JN986846 | Escherichia phage vB_EcoM_ACG-C40 | 167396 | 35.237 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.530 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus c40 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN991020 | Pseudomonas phage Bf7 | 40058 | 58.405 | Pseudomonas | Group I | Bifseptvirus | Bifseptvirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas tolaasii LMG 2342 | Complete | High-quality | 100.000 | DTR (high-confidence) | Bifseptvirus | Bifseptvirus Bf7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ007353 | Salmonella phage SE2 | 43221 | 49.645 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Enteritidis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus SE2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |