INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JN871591 | Salmonella phage SPN19 | 59203 | 56.524 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | High-quality | High-quality | 91.850 | AAI-based (high-confidence) | Chivirus | Chivirus SPN19 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_13 |
| JN880423 | Salisaeta icosahedral phage 1 | 43788 | 57.226 | Salisaeta | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salisaeta sp. SP9-1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_16 |
| JN882264 | Halorubrum pleomorphic virus 2 | 10656 | 63.701 | Halorubrum | Group II | Alphapleolipovirus | Alphapleolipovirus | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Halorubrum sp. SS5-4 | High-quality | High-quality | 99.830 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JN882265 | Halorubrum pleomorphic virus 3 | 8770 | 58.335 | Halorubrum | Group II | Betapleolipovirus | Betapleolipovirus | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Halorubrum sp. SP3-3 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JN882266 | Halorubrum pleomorphic virus 6 | 8549 | 62.674 | Halorubrum | Group II | Alphapleolipovirus | Alphapleolipovirus | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Halorubrum sp. SS7-4 | Medium-quality | Genome-fragment | 84.420 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| JN882267 | Halogeometricum pleomorphic virus 1 | 9694 | 61.605 | Halogeometricum | Group II | Betapleolipovirus | Betapleolipovirus | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Halogeometricum sp. CG-9 | Medium-quality | Genome-fragment | 89.710 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JN882284 | Cronobacter phage vB_CsaM_GAP31 | 147940 | 46.298 | Cronobacter | Group I | Seunavirus | Seunavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 99.610 | AAI-based (high-confidence) | Seunavirus | Seunavirus GAP31 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JN882285 | Cronobacter phage vB_CsaM_GAP32 | 358663 | 35.551 | Cronobacter | Group I | Mimasvirus | Mimasvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 98.900 | AAI-based (high-confidence) | Mimasvirus | Mimasvirus GAP32 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JN882286 | Cronobacter phage vB_CsaP_GAP52 | 76631 | 44.221 | Cronobacter | Group I | Crifsvirus | Crifsvirus | Unclassified | Grimontviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Crifsvirus | Crifsvirus GAP52 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN882287 | Cronobacter phage vB_CsaM_GAP161 | 178193 | 44.523 | Cronobacter | Group I | Pseudotevenvirus | Pseudotevenvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pseudotevenvirus | Pseudotevenvirus gap161 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |