INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
JN797797	Bacillus phage BCP78	156176	39.859	Bacillus	Group I	Tsarbombavirus	Tsarbombavirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus	High-quality	High-quality	98.200	AAI-based (high-confidence)	Tsarbombavirus	Tsarbombavirus BCP78	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JN797798	Bacillus phage BCU4	154371	39.857	Bacillus	Group I	Tsarbombavirus	Tsarbombavirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus	High-quality	High-quality	97.040	AAI-based (high-confidence)	Tsarbombavirus	Tsarbombavirus BCP78	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JN800508	Clostridium phage phi24R	18919	27.803	Clostridium	Group I	Gregsiragusavirus	Gregsiragusavirus	Denniswatsonvirinae	Guelinviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridium perfringens	Complete	High-quality	100.000	ITR (high-confidence)	Gregsiragusavirus	Gregsiragusavirus phi24R	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JN808773	Pseudomonas phage F_HA0480sp/Pa1651	37374	64.141	Pseudomonas	Group I	Casadabanvirus	Casadabanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	98.150	AAI-based (high-confidence)	Casadabanvirus	Casadabanvirus FHA0480	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_1
JN811560	Pseudomonas phage JBD26	37840	64.115	Pseudomonas	Group I	Casadabanvirus	Casadabanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	98.850	AAI-based (high-confidence)	Casadabanvirus	Casadabanvirus JBD26	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_1;integrase orf_5
JN831653	Mycobacterium phage Fionnbharth	58076	68.007	Mycobacterium	Group I	Fionnbharthvirus	Fionnbharthvirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fionnbharthvirus	Fionnbharthvirus fionnbharth	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_43;immunity orf_45;cro orf_46
JN831654	Mycobacterium phage Saintus	49228	61.235	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	95.170	AAI-based (high-confidence)	Fromanvirus	Fromanvirus saintus	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_77
JN848801	Vibrio phage VCY	7103	41.405	Vibrio	Group II	Vicialiavirus	Vicialiavirus	Unclassified	Inoviridae	Tubulavirales	Faserviricetes	Hofneiviricota	Loebvirae	Floreoviria	Vibrio cholerae str. 10E09PW02	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
JN849462	Vibrio phage phi-pp2	246421	42.555	Vibrio	Group I	Schizotequatrovirus	Schizotequatrovirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	High-quality	High-quality	91.660	AAI-based (high-confidence)	Schizotequatrovirus	Schizotequatrovirus KVP40	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JN859129	Mycobacterium phage DotProduct	55363	61.752	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	96.110	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus dotproduct	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_39;immunity orf_41;antirepressor orf_43