INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HQ317387 | Sulfitobacter phage phiCB2047-B | 74485 | 42.983 | Sulfitobacter | Group I | Raunefjordenvirus | Raunefjordenvirus | Rhodovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sulfitobacter sp. CB2047 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Raunefjordenvirus | Raunefjordenvirus CB2047B | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ317388 | Synechococcus phage S-RIP1 | 44892 | 42.930 | Synechococcus | Group I | Kajamvirus | Kajamvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH8101 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kajamvirus | Kajamvirus SRIP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ317389 | Synechococcus phage S-RIP2 | 45728 | 47.343 | Synechococcus | Group I | Sednavirus | Sednavirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sednavirus | Sednavirus SRIP2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| HQ317390 | Colwellia phage 9A | 104936 | 36.611 | Colwellia | Group I | Franklinbayvirus | Franklinbayvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Colwellia psychrerythaea strain 34H | Complete | High-quality | 100.000 | DTR (high-confidence) | Franklinbayvirus | Franklinbayvirus fv9A | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ317391 | Cyanophage S-SSM6a | 232883 | 39.127 | Synechococcus | Group I | Lipsvirus | Lipsvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH8109 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lipsvirus | Lipsvirus ssm7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ317392 | Cellulophaga phage phiSM | 44557 | 33.927 | Cellulophaga | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga sp. MM#3 | Medium-quality | Genome-fragment | 81.660 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ317393 | Vibrio phage nt-1 | 247511 | 41.327 | Vibrio | Group I | Mylasvirus | Mylasvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio natriegens HER1138 | High-quality | High-quality | 93.340 | AAI-based (high-confidence) | Mylasvirus | Mylasvirus persius | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ331142 | Salmonella phage vB_SenM-S16 | 160221 | 36.877 | Salmonella | Group I | Gelderlandvirus | Gelderlandvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 95.050 | AAI-based (high-confidence) | Gelderlandvirus | Gelderlandvirus s16 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ332136 | Dunaliella viridis virus SI2 | 37328 | 62.704 | Dunaliella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dunaliella viridis var. palmelloides Teodoresco (Chlorophyta) | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ332137 | Prochlorococcus phage P-SSP3 | 46198 | 37.941 | Prochlorococcus | Group I | Tritonvirus | Tritonvirus | Sechaudvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus marinus MIT9312 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tritonvirus | Tritonvirus PSSP3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_44 |