INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HQ332138 | Paenibacillus phage PG1 | 37644 | 42.400 | Paenibacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus glucanolyticus P073A | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_27 |
| HQ332139 | Prochlorococcus phage P-RSP2 | 42257 | 34.049 | Prochlorococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus marinus MIT9302 | High-quality | High-quality | 96.660 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ332140 | Prochlorococcus phage P-GSP1 | 44945 | 39.551 | Prochlorococcus | Group I | Lingvirus | Lingvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus marinus MED4 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lingvirus | Lingvirus PGSP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ332141 | Halorubrum virus CGphi46 | 39784 | 65.107 | Halorubrum | Group I | Seejivirus | Seejivirus | Unclassified | Graaviviridae | Kirjokansivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum sp. M4 25-10-8A | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ332142 | Sulfitobacter phage pCB2047-A | 40929 | 58.802 | Sulfitobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sulfitobacter sp. CB2047 | High-quality | High-quality | 98.710 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_52 |
| HQ333270 | Yersinia phage Yep-phi | 38616 | 47.100 | Yersinia | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis | Complete | High-quality | 100.000 | DTR (high-confidence) | Berlinvirus | Berlinvirus berlin | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ337021 | Prochlorococcus phage P-SSM3 | 179063 | 36.731 | Prochlorococcus | Group I | Ronodorvirus | Ronodorvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus marinus NATL2A | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ronodorvirus | Ronodorvirus pssm3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_186 |
| HQ337022 | Prochlorococcus phage P-SSP10 | 47325 | 39.231 | Prochlorococcus | Group I | Tangaroavirus | Tangaroavirus | Sechaudvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus marinus NATL2A | Complete | High-quality | 100.000 | DTR (high-confidence) | Tangaroavirus | Tangaroavirus PSSP10 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| HQ377372 | Liberibacter phage SC1 | 40048 | 41.196 | Liberibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Liberibacter asiaticus UF506 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_32 |
| HQ377373 | Liberibacter phage SC2 | 38997 | 39.377 | Liberibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Liberibacter asiaticus UF506 | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_32 |