INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HQ316584 | Cyanophage SS120-1 | 46997 | 40.492 | Prochlorococcus | Group I | Banchanvirus | Banchanvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus marinus SS120 | Complete | High-quality | 100.000 | DTR (high-confidence) | Banchanvirus | Banchanvirus SS1201 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_3 |
| HQ316603 | Cyanophage S-SSM6b | 182368 | 39.403 | Synechococcus | Group I | Greenvirus | Greenvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH8109 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Greenvirus | Greenvirus ssm4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ316604 | Vibrio phage SIO-2 | 81184 | 44.978 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio sp. SWAT-3 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ317290 | Synechococcus phage S-RIM2 R21_2007 | 175430 | 42.167 | Synechococcus | Group I | Nerrivikvirus | Nerrivikvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nerrivikvirus | Nerrivikvirus srim2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ317291 | Synechococcus phage S-RIM2 R9_2006 | 175419 | 42.161 | Synechococcus | Group I | Nerrivikvirus | Nerrivikvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nerrivikvirus | Nerrivikvirus srim2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ317292 | Synechococcus phage S-RIM2 R1_1999 | 175430 | 42.155 | Synechococcus | Group I | Nerrivikvirus | Nerrivikvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nerrivikvirus | Nerrivikvirus srim2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ317383 | Synechococcus phage S-IOM18 | 171797 | 40.572 | Synechococcus | Group I | Tefnutvirus | Tefnutvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 98.230 | AAI-based (high-confidence) | Tefnutvirus | Tefnutvirus siom18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ317384 | Sulfitobacter phage pCB2047-C | 40931 | 58.994 | Sulfitobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sulfitobacter sp. CB2047 | High-quality | High-quality | 98.790 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_32 |
| HQ317385 | Synechococcus phage S-RIM8 A.HR5 | 168327 | 40.606 | Synechococcus | Group I | Neptunevirus | Neptunevirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 96.420 | AAI-based (high-confidence) | Neptunevirus | Neptunevirus srim18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ317386 | Vibrio phage VBM1 | 38374 | 42.258 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus RIMD2210633 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |