INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HG798901 | Clostridium phage phiCDHM11 | 32000 | 29.256 | Clostridium | Group I | Sherbrookevirus | Sherbrookevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 93.660 | AAI-based (high-confidence) | Sherbrookevirus | Sherbrookevirus CDHM11 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_34;cro orf_39 |
| HG799490 | Streptococcus phage IC1 | 39965 | 41.121 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae isolate 9908+13028 | High-quality | High-quality | 96.700 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus IC1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_45;integrase orf_65 |
| HG799496 | Streptococcus phage K13 | 39360 | 40.615 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae isolate K13-810 | High-quality | High-quality | 95.190 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus K13 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_54;integrase orf_62 |
| HG799497 | Streptococcus phage DCC1738 | 38392 | 40.813 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae isolate DCC1738 | High-quality | High-quality | 92.950 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus DCC1738 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_52;integrase orf_65 |
| HG803181 | Vibrio phage PV94 | 33828 | 48.170 | Vibrio | Group I | Vulnificusvirus | Vulnificusvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio vulnificus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vulnificusvirus | Vulnificusvirus PV94 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| HG803182 | Escherichia phage P13363 | 60896 | 50.227 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli CB13363, serotype O104:H4 | High-quality | High-quality | 92.360 | AAI-based (high-confidence) | Oslovirus | Oslovirus ov191 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_9;antirepressor orf_24;cro orf_27;cro orf_28;antirepressor orf_42;antirepressor orf_45 |
| HG803183 | Escherichia phage P13368 | 60896 | 50.227 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli CB13368, serotype O104:H4 | High-quality | High-quality | 92.360 | AAI-based (high-confidence) | Oslovirus | Oslovirus ov191 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_9;antirepressor orf_24;cro orf_27;cro orf_28;antirepressor orf_42;antirepressor orf_45 |
| HG803184 | Escherichia phage P13353 | 60896 | 50.227 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli CB13353, serotype O104:H4 | High-quality | High-quality | 92.360 | AAI-based (high-confidence) | Oslovirus | Oslovirus ov191 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_9;antirepressor orf_24;cro orf_27;cro orf_28;antirepressor orf_42;antirepressor orf_45 |
| HG803185 | Escherichia phage P13357 | 60896 | 50.227 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli CB13357, serotype O104:H4 | High-quality | High-quality | 92.360 | AAI-based (high-confidence) | Oslovirus | Oslovirus ov191 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_9;antirepressor orf_24;cro orf_27;cro orf_28;antirepressor orf_42;antirepressor orf_45 |
| HG813241 | Cronobacter phage Dev2 | 38966 | 52.559 | Cronobacter | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter turicensis DNV1 | High-quality | High-quality | 97.950 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus Dev2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |