INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
HG818823	Citrobacter phage CR44b	39207	50.491	Citrobacter	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter rodentium	High-quality	High-quality	98.560	AAI-based (high-confidence)	Kayfunavirus	Kayfunavirus CR44b	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
HG818824	Citrobacter phage CR8	39651	49.681	Citrobacter	Group I	Caroctavirus	Caroctavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter rodentium	Complete	High-quality	100.000	DTR (high-confidence)	Caroctavirus	Caroctavirus CR8	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
HG934469	Salmonella phage vB_SenS-Ent2	42093	49.916	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Enteritidis	High-quality	High-quality	98.220	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus Ent1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
HG934470	Salmonella phage vB_SenS-Ent3	42764	49.792	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Enteritidis	High-quality	High-quality	99.730	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus Ent1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
HG962375	Pseudomonas phage vB_PaeP_C2-10_Ab09	72028	54.897	Pseudomonas	Group I	Litunavirus	Litunavirus	Migulavirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	98.890	AAI-based (high-confidence)	Litunavirus	Litunavirus Ab09	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
HG962376	Pseudomonas phage vB_PaeS_SCH_Ab26	43056	53.426	Pseudomonas	Group I	Septimatrevirus	Septimatrevirus	Jondennisvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	100.000	AAI-based (high-confidence)	Septimatrevirus	Septimatrevirus Ab26	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
HG992588	Vibrio phage B1_1	77004	48.856	Vibrio	Group I	Mardecavirus	Mardecavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Mardecavirus	Mardecavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
HG994092	Klebsiella phage TUN1	41181	52.942	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Przondovirus	Przondovirus TUN1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
HM004124	Acinetobacter phage Acj9	169947	40.028	Acinetobacter	Group I	Acajnonavirus	Acajnonavirus	Twarogvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter johnsonii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Acajnonavirus	Acajnonavirus acj9	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
HM029250	Lactococcus phage 949	114768	32.689	Lactococcus	Group I	Audreyjarvisvirus	Audreyjarvisvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis strain ML8	High-quality	High-quality	91.230	AAI-based (high-confidence)	Audreyjarvisvirus	Audreyjarvisvirus av949	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1;integrase orf_123