INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HG792102 | Escherichia phage P13803 | 60941 | 50.242 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli CB13803, STEC O2:H27 | High-quality | High-quality | 92.430 | AAI-based (high-confidence) | Oslovirus | Oslovirus ov191 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_9;antirepressor orf_24;cro orf_27;cro orf_28;antirepressor orf_42;antirepressor orf_45 |
| HG792103 | Escherichia phage P8983 | 61343 | 50.231 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 93.030 | AAI-based (high-confidence) | Oslovirus | Oslovirus ov191 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_9;antirepressor orf_24;cro orf_27;cro orf_28;antirepressor orf_42;antirepressor orf_45 |
| HG792104 | Escherichia phage P13771 | 61566 | 50.153 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Homo sapiens | High-quality | High-quality | 93.430 | AAI-based (high-confidence) | Oslovirus | Oslovirus ov191 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_9;antirepressor orf_25;cro orf_28;cro orf_29;antirepressor orf_43 |
| HG792105 | Escherichia phage P14437 | 61465 | 50.227 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Homo sapiens | High-quality | High-quality | 93.220 | AAI-based (high-confidence) | Oslovirus | Oslovirus ov191 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_9;antirepressor orf_25;cro orf_28;cro orf_29;antirepressor orf_43;antirepressor orf_46 |
| HG793132 | Burkholderia phage Bp-AMP1 | 42409 | 61.749 | Burkholderia | Group I | Ampunavirus | Ampunavirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pseudomallei K96243 | High-quality | High-quality | 99.070 | AAI-based (high-confidence) | Ampunavirus | Ampunavirus BpAMP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_6 |
| HG796219 | Burkholderia phage Bp-AMP2 | 42492 | 61.758 | Burkholderia | Group I | Ampunavirus | Ampunavirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pseudomallei K96243 | High-quality | High-quality | 99.270 | AAI-based (high-confidence) | Ampunavirus | Ampunavirus BpAMP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_6 |
| HG796220 | Burkholderia phage Bp-AMP3 | 41882 | 61.774 | Burkholderia | Group I | Ampunavirus | Ampunavirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pseudomallei K96243 | High-quality | High-quality | 97.840 | AAI-based (high-confidence) | Ampunavirus | Ampunavirus BpAMP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HG796221 | Burkholderia phage Bp-AMP4 | 42112 | 61.785 | Burkholderia | Group I | Ampunavirus | Ampunavirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pseudomallei K96243 | High-quality | High-quality | 98.380 | AAI-based (high-confidence) | Ampunavirus | Ampunavirus BpAMP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HG796225 | Clostridium phage phiCDHM13 | 33596 | 29.989 | Clostridium | Group I | Sherbrookevirus | Sherbrookevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 98.350 | AAI-based (high-confidence) | Sherbrookevirus | Sherbrookevirus CDHM13 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_34;cro orf_38;integrase orf_49 |
| HG798806 | Pseudomonas phage vB_PaeP_Tr60_Ab31 | 45550 | 57.104 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_19 |