INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HF569092 | Brucella phage Wb | 38253 | 48.166 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella sp. | High-quality | High-quality | 93.390 | AAI-based (high-confidence) | Perisivirus | Perisivirus Pr | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HF937074 | Staphylococcus phage PSa3 | 17602 | 29.588 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.480 | AAI-based (high-confidence) | Rosenblumvirus | Rosenblumvirus PSa3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HG007973 | Stenotrophomonas phage SMA7 | 7069 | 62.343 | Stenotrophomonas | Group II | Subteminivirus | Subteminivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Stenotrophomonas maltophilia Khak84 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HG315669 | Stenotrophomonas phage SMA6 | 7648 | 62.631 | Stenotrophomonas | Group II | Scuticavirus | Scuticavirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Stenotrophomonas maltophilia str. Khak84 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HG322870 | Sulfolobus monocaudavirus SMV1 | 48775 | 38.421 | Sulfolobus | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus solfataricus P2 | High-quality | High-quality | 91.910 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_21;integrase orf_34 |
| HG380752 | Streptococcus phage TP-778L | 41757 | 38.978 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus SK778 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Brussowvirus | Brussowvirus TP778L | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_3;antirepressor orf_6 |
| HG424323 | Streptococcus phage 20617 | 48800 | 39.975 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus DSM 20617 | Complete | High-quality | 100.000 | Provirus (high-confidence) | Brussowvirus | Brussowvirus 20617 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_4;cro orf_6;cro orf_7;cro orf_8 |
| HG428758 | Brucella phage F1 | 41143 | 48.176 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Perisivirus | Perisivirus Tb | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HG518155 | Pseudomonas phage TL | 45696 | 52.366 | Pseudomonas | Group I | Bruynoghevirus | Bruynoghevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bruynoghevirus | Bruynoghevirus TL | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HG531805 | Clostridium phage CDMH1 | 54279 | 28.446 | Clostridium | Group I | Yongloolinvirus | Yongloolinvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | Yongloolinvirus | Yongloolinvirus CDMH1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_44;antirepressor orf_51;antirepressor orf_85 |