INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HE978309 | Enterobacteria phage GEC-3S | 163424 | 40.549 | Enterobacteria | Group I | Krischvirus | Krischvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O104:H4 | High-quality | High-quality | 98.090 | AAI-based (high-confidence) | Krischvirus | Krischvirus gec3s | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HE981739 | Pseudotevenvirus RB43 | 179839 | 43.161 | Unspecified | Group I | Pseudotevenvirus | Pseudotevenvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pseudotevenvirus | Pseudotevenvirus RB43 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HE983844 | Pseudomonas phage vB_PaeP_C1-14_Or | 45469 | 52.000 | Pseudomonas | Group I | Bruynoghevirus | Bruynoghevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bruynoghevirus | Bruynoghevirus PaP3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HE983845 | Pseudomonas phage vB_PaeM_C2-10_Ab1 | 92777 | 49.277 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa C2-10 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pakpunavirus | Pakpunavirus CAb1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HF543949 | Pseudomonas phage vB_PaeP_p2-10_Or1 | 44030 | 51.994 | Pseudomonas | Group I | Bruynoghevirus | Bruynoghevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 97.150 | AAI-based (high-confidence) | Bruynoghevirus | Bruynoghevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HF563658 | Streptococcus phage phiBHN167 | 37375 | 38.341 | Streptococcus | Group I | Paclarkvirus | Paclarkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae BHN167 | High-quality | High-quality | 96.600 | AAI-based (high-confidence) | Paclarkvirus | Paclarkvirus BHN167 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_39;integrase orf_44 |
| HF569088 | Brucella phage Bk2 | 38253 | 48.177 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella sp. | High-quality | High-quality | 93.390 | AAI-based (high-confidence) | Perisivirus | Perisivirus Pr | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HF569089 | Brucella phage Fi | 41142 | 48.182 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Perisivirus | Perisivirus Tb | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HF569090 | Brucella phage R/C | 38208 | 48.163 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella sp. | High-quality | High-quality | 93.280 | AAI-based (high-confidence) | Perisivirus | Perisivirus Pr | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HF569091 | Brucella phage Tb | 41143 | 48.173 | Brucella | Group I | Perisivirus | Perisivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brucella abortus S19 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Perisivirus | Perisivirus Tb | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |