INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
HE584812	Pseudomonas phage LPB1	36814	64.364	Pseudomonas	Group I	Casadabanvirus	Casadabanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	96.240	AAI-based (high-confidence)	Casadabanvirus	Casadabanvirus LPB1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_1
HE600015	Dickeya phage vB-DsoM-LIMEstone1	152427	49.279	Dickeya	Group I	Limestonevirus	Limestonevirus	Aglimvirinae	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Dickeya solani	High-quality	High-quality	96.530	AAI-based (high-confidence)	Limestonevirus	Limestonevirus limestone	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
HE608841	Bacteroides phage B124-14	47159	38.750	Bacteroides	Group I	Gotuavirus	Gotuavirus	Cardingvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacteroides fragilis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gotuavirus	Gotuavirus B12414	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_64
HE611333	Pseudomonas phage tf	46271	53.202	Pseudomonas	Group I	Krylovvirus	Krylovvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas putida PpG1	High-quality	High-quality	100.000	AAI-based (high-confidence)	Krylovvirus	Krylovvirus tf	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
HE614281	Staphylococcus phage SpaA1	42784	35.635	Staphylococcus	Group I	Beceayunavirus	Beceayunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus pasteuri	High-quality	High-quality	96.520	AAI-based (high-confidence)	Beceayunavirus	Beceayunavirus BceA1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_20;integrase orf_31;antirepressor orf_39
HE614282	Bacillus phage BceA1	42932	35.663	Bacillus	Group I	Beceayunavirus	Beceayunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus/thuringiensis group	High-quality	High-quality	96.840	AAI-based (high-confidence)	Beceayunavirus	Beceayunavirus BceA1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_20;integrase orf_31;antirepressor orf_39
HE664024	Escherichia phage P13374	60894	50.230	Escherichia	Group I	Oslovirus	Oslovirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli CB13374, serotype O104:H4	High-quality	High-quality	92.360	AAI-based (high-confidence)	Oslovirus	Oslovirus ov191	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;antirepressor orf_9;antirepressor orf_24;cro orf_27;cro orf_28;antirepressor orf_42;antirepressor orf_45
HE681887	Alphaspiravirus yamagawaense	24893	46.668	Unspecified	Unclassified	Alphaspiravirus	Alphaspiravirus	Unclassified	Spiraviridae	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Aeropyrum pernix	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_28;integrase orf_32
HE775250	Salmonella phage vB_SenS-Ent1	42391	49.789	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Enteritidis	High-quality	High-quality	98.920	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus Ent1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
HE806280	Acinetobacter phage AP22	46387	37.743	Acinetobacter	Group I	Theraphagusvirus	Theraphagusvirus	Unclassified	Hirszfeldviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Theraphagusvirus	Theraphagusvirus AP22	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic