INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GU911519 | Acinetobacter phage Acj61 | 164093 | 39.006 | Acinetobacter | Group I | Lasallevirus | Lasallevirus | Twarogvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter johnsonii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lasallevirus | Lasallevirus Acj61 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GU936714 | Synechococcus phage S-CBS2 | 72332 | 54.474 | Synechococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. CB0204 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| GU936715 | Synechococcus phage S-CBS3 | 33004 | 60.720 | Synechococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. CB0202 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| GU942563 | Affertcholeramvirus CTXphi | 17070 | 46.257 | Unspecified | Group II | Affertcholeramvirus | Affertcholeramvirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae O1 biovar El Tor strain VC106 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| GU943031 | uncultured phage MedDCM-OCT-S08-C159 | 10313 | 37.496 | Unspecified | Group I | Jalkavirus | Jalkavirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Low-quality | Genome-fragment | 27.730 | AAI-based (high-confidence) | Jalkavirus | Jalkavirus S08C159 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GU943054 | uncultured phage MedDCM-OCT-S04-C24 | 20430 | 46.848 | Unspecified | Group I | Pekhitvirus | Pekhitvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Low-quality | Genome-fragment | 45.200 | AAI-based (high-confidence) | Pekhitvirus | Pekhitvirus S04C24 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GU949551 | Clostridium phage phiCD6356 | 37664 | 28.380 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | parA orf_32;integrase orf_58 |
| GU967410 | Lactobacillus phage LBR48 | 48211 | 45.877 | Lactobacillus | Group I | Anamdongvirus | Anamdongvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Anamdongvirus | Anamdongvirus LBR48 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_11 |
| GU988610 | Pseudomonas phage JG004 | 93017 | 49.261 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pakpunavirus | Pakpunavirus JG004 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_89 |
| HE580237 | Betaguttavirus kodakarajimaense | 13769 | 55.501 | Unspecified | Unclassified | Betaguttavirus | Betaguttavirus | Unclassified | Guttaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Aeropyrum pernix K1 | Low-quality | Genome-fragment | 10.370 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_24 |