Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
GU580941Rhodococcus phage ReqiPepy67679753.411RhodococcusGroup I PepyhexavirusPepyhexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodococcus equiHigh-qualityHigh-quality99.310AAI-based (high-confidence) PepyhexavirusPepyhexavirus pepy6Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
GU580942Rhodococcus phage ReqiPoco67806453.265RhodococcusGroup I PepyhexavirusPepyhexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodococcus equiHigh-qualityHigh-quality100.000AAI-based (high-confidence) PepyhexavirusPepyhexavirus poco6Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
GU580943Rhodococcus phage ReqiPine55923167.095RhodococcusGroup I ReqipinevirusReqipinevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodococcus equiHigh-qualityHigh-quality100.000AAI-based (high-confidence) ReqipinevirusReqipinevirus reqipine5Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
GU583987Pseudomonas phage phiIBB-PF7A4097356.271PseudomonasGroup I PifdecavirusPifdecavirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas fluorescensCompleteHigh-quality100.000DTR (high-confidence) PifdecavirusPifdecavirus IBBPF7ACurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
GU722197Hyperthermophilic Archaeal Virus 21766652.083HyperthermophilicUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified UnspecifiedHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
GU815091Pseudomonas phage JG0246627555.621PseudomonasGroup I PbunavirusPbunavirusUnclassifiedLindbergviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) PbunavirusPbunavirus JG024Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
GU815339Enterococcus phage EFRM311694534.577EnterococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalisLow-qualityGenome-fragment41.560AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
GU903191Escherichia phage vB_EcoM_ECO1230-104166653.374EscherichiaGroup I JilinvirusJilinvirusIiscvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality99.690AAI-based (high-confidence) JilinvirusJilinvirus CVM10Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
GU911303Burkholderia phage KS53723663.707BurkholderiaGroup I KisquinquevirusKisquinquevirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Burkholderia cenocepacia strain C6433High-qualityHigh-quality99.950AAI-based (high-confidence) KisquinquevirusKisquinquevirus KS5The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_1;cro orf_47
GU911304Burkholderia phage KL34055563.225BurkholderiaGroup I KayeltresvirusKayeltresvirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Burkholderia ambifaria strain LMG 17828High-qualityHigh-quality100.000AAI-based (high-confidence) KayeltresvirusKayeltresvirus KL3The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_1
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