INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GU339467 | Mycobacterium phage RedRock | 53332 | 64.530 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus redrock | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | parA orf_35;immunity orf_71 |
| GU385905 | Escherichia phage phiX174 | 5386 | 44.727 | Escherichia | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Escherichia coli | High-quality | High-quality | 91.680 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| GU393987 | Caulobacter phage Cd1 | 41581 | 61.213 | Caulobacter | Group I | Conareevirus | Conareevirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter crescentus | High-quality | High-quality | 99.770 | AAI-based (high-confidence) | Conareevirus | Conareevirus Cd1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GU396103 | Aeromonas phage PX29 | 222006 | 42.043 | Aeromonas | Group I | Angelvirus | Angelvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas salmonicida | High-quality | High-quality | 98.590 | AAI-based (high-confidence) | Angelvirus | Angelvirus px29 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_82 |
| GU459069 | Aeromonas phage 65 | 235229 | 37.196 | Aeromonas | Group I | Ishigurovirus | Ishigurovirus | Emmerichvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas salmonicida | High-quality | High-quality | 98.950 | AAI-based (high-confidence) | Ishigurovirus | Ishigurovirus osborne | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GU477322 | Staphylococcus phage SAP-26 | 41207 | 34.016 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 95.710 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus SAP26 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_29;cro orf_32;cro orf_33;antirepressor orf_34;integrase orf_60 |
| GU557055 | Puniceispirillum phage HMO-2011 | 55282 | 43.088 | Puniceispirillum | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Puniceispirillum marinum IMCC1322 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_17 |
| GU568037 | Deep-sea thermophilic phage D6E | 49335 | 45.998 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_40 |
| GU573886 | Salmonella phage ST160 | 40986 | 47.060 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Typhimurium | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lederbergvirus | Lederbergvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_4;integrase orf_16;antirepressor orf_25 |
| GU580940 | Rhodococcus phage ReqiDocB7 | 75772 | 56.658 | Rhodococcus | Group I | Docdeeseptimavirus | Docdeeseptimavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus equi | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Docdeeseptimavirus | Docdeeseptimavirus Doc7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |