Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
GU229986Bacillus phage 2505650536.441BacillusGroup I CecivirusCecivirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus cereusHigh-qualityHigh-quality100.000AAI-based (high-confidence) CecivirusCecivirus cv250Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
GU233956Bacillus phage 111433907734.962BacillusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus cereusMedium-qualityGenome-fragment87.780AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_17;integrase orf_25;integrase orf_52
GU247132Mycobacterium phage SkiPole5313763.649MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) FromanvirusFromanvirus skipoleThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_38;immunity orf_81
GU247133Mycobacterium phage Fang6856966.456MycobacteriumGroup I PegunavirusPegunavirusBclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality98.690AAI-based (high-confidence) PegunavirusPegunavirus sotoCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
GU247134Mycobacterium phage Scoot17C6843266.503MycobacteriumGroup I PegunavirusPegunavirusBclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality98.500AAI-based (high-confidence) PegunavirusPegunavirus Pg1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
GU295964Klebsiella phage KP1517443641.831KlebsiellaGroup I SlopekvirusSlopekvirusUnclassifiedStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality97.910AAI-based (high-confidence) SlopekvirusSlopekvirus kp15Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
GU296433Campylobacter phage NCTC1267313504126.154CampylobacterGroup I FletchervirusFletchervirusUnclassifiedConnertonviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Campylobacter jejuniHigh-qualityHigh-quality100.000AAI-based (high-confidence) FletchervirusFletchervirus NCTC12673Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
GU321093Haloarcula hispanica pleomorphic virus 1808255.778HaloarculaGroup II AlphapleolipovirusAlphapleolipovirusUnclassifiedPleolipoviridaeHaloruviralesHuolimaviricetesSaleviricotaTrapaviraeFloreoviria Haloarcula hispanicaHigh-qualityHigh-quality99.510AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
GU323318Enterobacter phage CC3116554039.918EnterobacterGroup I KaramvirusKaramvirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality97.430AAI-based (high-confidence) KaramvirusKaramvirus cc31Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
GU323708Lactobacillus phage phiPYB53284745.468LactobacillusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactobacillus fermentum strain YB5High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateantirepressor orf_36
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