INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GQ981382 | Shigella phage SP18 | 170605 | 40.445 | Shigella | Group I | Gaprivervirus | Gaprivervirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella sonnei | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gaprivervirus | Gaprivervirus sp18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GU060500 | Mycobacterium phage Ardmore | 52141 | 61.491 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis | High-quality | High-quality | 90.590 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus ardmore | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;cro orf_39 |
| GU070616 | Salmonella phage PVPSE1 | 145964 | 45.607 | Salmonella | Group I | Seunavirus | Seunavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enteritidis | High-quality | High-quality | 98.040 | AAI-based (high-confidence) | Seunavirus | Seunavirus PVPSE1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| GU071090 | Cyanophage PSS2 | 105532 | 52.305 | Prochlorococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.140 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_106 |
| GU071091 | Escherichia phage T7 | 39778 | 48.384 | Escherichia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.670 | AAI-based (high-confidence) | Teseptimavirus | Teseptimavirus T7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GU071092 | Prochlorococcus phage P-SSM2 | 252407 | 35.503 | Prochlorococcus | Group I | Salacisavirus | Salacisavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Salacisavirus | Salacisavirus pssm2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GU071093 | Tiamatvirus PSSP7 | 45135 | 38.564 | Unspecified | Group I | Tiamatvirus | Tiamatvirus | Sechaudvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.100 | AAI-based (high-confidence) | Tiamatvirus | Tiamatvirus PSSP7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_10 |
| GU071094 | Synechococcus phage S-SM1 | 174079 | 41.138 | Synechococcus | Group I | Thetisvirus | Thetisvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH6501 | High-quality | High-quality | 99.650 | AAI-based (high-confidence) | Thetisvirus | Thetisvirus ssm1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GU071095 | Synechococcus phage S-SM2 | 190789 | 40.426 | Synechococcus | Group I | Nilusvirus | Nilusvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH8017 | High-quality | High-quality | 99.500 | AAI-based (high-confidence) | Nilusvirus | Nilusvirus ssm2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GU071096 | Synechococcus phage S-ShM2 | 179563 | 41.107 | Synechococcus | Group I | Ahtivirus | Ahtivirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH8102 | High-quality | High-quality | 99.330 | AAI-based (high-confidence) | Ahtivirus | Ahtivirus sagseatwo | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |