INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
GU071097	Synechococcus phage S-SSM5	176184	39.962	Synechococcus	Group I	Glaucusvirus	Glaucusvirus	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Synechococcus sp. WH8102	High-quality	High-quality	100.000	AAI-based (high-confidence)	Glaucusvirus	Glaucusvirus ssm5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
GU071098	Synechococcus phage S-SSM7	232878	39.116	Synechococcus	Group I	Lipsvirus	Lipsvirus	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Synechococcus sp. WH8109	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lipsvirus	Lipsvirus ssm7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
GU071099	Prochlorococcus phage P-RSM4	176428	37.644	Prochlorococcus	Group I	Thaumasvirus	Thaumasvirus	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Prochlorococcus sp. MIT9303	High-quality	High-quality	99.960	AAI-based (high-confidence)	Thaumasvirus	Thaumasvirus stim4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_201
GU071100	Cyanophage 9515-10a	47055	39.197	Prochlorococcus	Group I	Tangaroavirus	Tangaroavirus	Sechaudvirinae	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Prochlorococcus sp. MIT9515	High-quality	High-quality	99.550	AAI-based (high-confidence)	Tangaroavirus	Tangaroavirus tv951510a	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
GU071101	Eurybiavirus PHM1	181044	37.849	Unspecified	Group I	Eurybiavirus	Eurybiavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Prochlorococcus sp. MED4	High-quality	High-quality	99.570	AAI-based (high-confidence)	Eurybiavirus	Eurybiavirus PHM1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_160
GU071102	Cyanophage NATL1A-7	47741	38.732	Prochlorococcus	Group I	Cheungvirus	Cheungvirus	Sechaudvirinae	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Prochlorococcus sp. NATL1A	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cheungvirus	Cheungvirus NATL1A7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_22
GU071103	Prochlorococcus phage P-SSM7	182180	37.086	Prochlorococcus	Group I	Palaemonvirus	Palaemonvirus	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Prochlorococcus sp. NATL1A	High-quality	High-quality	100.000	AAI-based (high-confidence)	Palaemonvirus	Palaemonvirus pssm7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
GU071104	Cyanophage NATL2A-133	47536	39.871	Prochlorococcus	Group I	Tangaroavirus	Tangaroavirus	Sechaudvirinae	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Prochlorococcus sp. NATL2A	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tangaroavirus	Tangaroavirus NATL2A133	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
GU071105	Prochlorococcus phage Syn1	191195	40.617	Prochlorococcus	Group I	Vellamovirus	Vellamovirus	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Synechococcus sp. WH8101	High-quality	High-quality	98.550	AAI-based (high-confidence)	Vellamovirus	Vellamovirus syn1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
GU071106	Synechococcus phage Syn19	175230	41.251	Synechococcus	Group I	Pontusvirus	Pontusvirus	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Synechococcus sp. WH8109	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pontusvirus	Pontusvirus syn19	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic