INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
GQ478084	Enterococcus phage phiFL2A	36270	34.607	Enterococcus	Group I	Phifelvirus	Phifelvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis	Medium-quality	Genome-fragment	87.510	AAI-based (high-confidence)	Phifelvirus	Phifelvirus FL2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_3;antirepressor orf_8;cro orf_43
GQ478085	Enterococcus phage phiFL2B	36826	34.573	Enterococcus	Group I	Phifelvirus	Phifelvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis	Medium-quality	Genome-fragment	88.480	AAI-based (high-confidence)	Phifelvirus	Phifelvirus FL2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_3;antirepressor orf_8
GQ478086	Enterococcus phage phiFL3A	39576	34.546	Enterococcus	Group I	Phifelvirus	Phifelvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis	High-quality	High-quality	97.790	AAI-based (high-confidence)	Phifelvirus	Phifelvirus FL3	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_3;antirepressor orf_8
GQ478087	Enterococcus phage phiFL3B	40275	34.498	Enterococcus	Group I	Phifelvirus	Phifelvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis	High-quality	High-quality	99.520	AAI-based (high-confidence)	Phifelvirus	Phifelvirus FL3	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_3;antirepressor orf_8
GQ478088	Enterococcus phage phiFL4A	37856	37.777	Enterococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_1;cro orf_4;cro orf_5
GQ502199	Sodalis phage SO-1	45169	54.582	Sodalis	Group I	Dhillonvirus	Dhillonvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Sodalis glossinidius	High-quality	High-quality	100.000	AAI-based (high-confidence)	Dhillonvirus	Dhillonvirus SO1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
GQ866233	Aggregatibacter phage S1249	43970	42.443	Aggregatibacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aggregatibacter actinomycetemcomitans D11S-1	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	antirepressor orf_50;integrase orf_60
GQ900512	Staphylococcus phage SAP090D	10726	33.787	Staphylococcus	Group I	Bronfenbrennervirinae	Unclassified	Bronfenbrennervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus strain SK1700	Low-quality	Genome-fragment	24.850	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
GQ919031	Streptomyces phage ZL12	90435	69.472	Streptomyces	Group I	Fuzanglongvirus	Fuzanglongvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces sp. ZL12	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fuzanglongvirus	Fuzanglongvirus ZL12	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_40;integrase orf_113
GQ979703	Lactococcus virus P2	27595	34.727	Lactococcus	Group I	Skunavirus	Skunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis subsp. cremoris MG1363	High-quality	High-quality	91.000	AAI-based (high-confidence)	Skunavirus	Skunavirus sk1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic