INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GQ421471 | Xylella phage Xfas53 | 36674 | 56.757 | Xylella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xylella fastidiosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1 |
| GQ422450 | Enterobacteria phage UAB_Phi20 | 41809 | 47.241 | Enterobacteria | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lederbergvirus | Lederbergvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_14;cro orf_35;antirepressor orf_36;integrase orf_40;integrase orf_55;cro orf_61 |
| GQ422451 | Enterobacteria phage Phi75 | 41136 | 47.469 | Enterobacteria | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | Lederbergvirus | Lederbergvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_3;integrase orf_18;cro orf_24;antirepressor orf_41;cro orf_62;antirepressor orf_63 |
| GQ443085 | Clostridium phage phiCP26F | 39188 | 30.262 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_25;antirepressor orf_34;antirepressor orf_45 |
| GQ451696 | Leuconostoc phage 1-A4 | 29508 | 36.146 | Leuconostoc | Group I | Unaquatrovirus | Unaquatrovirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc mesenteroides 1-A4 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Unaquatrovirus | Unaquatrovirus uv1A4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GQ452243 | Enterococcus phage phiEf11 | 42822 | 34.389 | Enterococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_31;cro orf_36;cro orf_37;antirepressor orf_38 |
| GQ468526 | Escherichia phage 285P | 39270 | 48.732 | Escherichia | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.280 | AAI-based (high-confidence) | Berlinvirus | Berlinvirus 285P | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GQ478081 | Enterococcus phage phiFL1A | 38764 | 34.014 | Enterococcus | Group I | Phifelvirus | Phifelvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 93.470 | AAI-based (high-confidence) | Phifelvirus | Phifelvirus FL1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_3;antirepressor orf_8 |
| GQ478082 | Enterococcus phage phiFL1B | 38989 | 33.979 | Enterococcus | Group I | Phifelvirus | Phifelvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 94.040 | AAI-based (high-confidence) | Phifelvirus | Phifelvirus FL1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_3;antirepressor orf_8 |
| GQ478083 | Enterococcus phage phiFL1C | 38721 | 34.023 | Enterococcus | Group I | Phifelvirus | Phifelvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 93.610 | AAI-based (high-confidence) | Phifelvirus | Phifelvirus FL1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_8;cro orf_53 |