INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GQ303266 | Mycobacterium phage UncleHowie | 68016 | 66.508 | Mycobacterium | Group I | Pegunavirus | Pegunavirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.900 | AAI-based (high-confidence) | Pegunavirus | Pegunavirus soto | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GQ334450 | Cyanophage PSS2 | 107530 | 52.301 | Prochlorococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus MIT9313 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_106 |
| GQ357915 | Delftia phage PhiW-14 | 157486 | 56.277 | Delftia | Group I | Ionavirus | Ionavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Delftia acidovorans | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ionavirus | Ionavirus W14 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GQ357916 | Escherichia phage D108 | 37235 | 51.760 | Escherichia | Group I | Muvirus | Muvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 96.770 | AAI-based (high-confidence) | Muvirus | Muvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_1 |
| GQ379227 | Streptomyces phage phiSASD1 | 37068 | 66.254 | Streptomyces | Group I | Sasdunavirus | Sasdunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces avermitilis | High-quality | High-quality | 97.780 | AAI-based (high-confidence) | Sasdunavirus | Sasdunavirus SASD1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GQ398772 | Staphylococcus phage P954 | 40761 | 33.993 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 96.490 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus P954 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_5;cro orf_6;antirepressor orf_7;antirepressor orf_10;integrase orf_37 |
| GQ403788 | Lactococcus phage 1358 | 36892 | 51.038 | Lactococcus | Group I | Whiteheadvirus | Whiteheadvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis SMQ-388 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Whiteheadvirus | Whiteheadvirus wv1358 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GQ403789 | Thermus phage P23-77 | 17036 | 67.950 | Thermus | Group I | Hukuchivirus | Hukuchivirus | Unclassified | Matsushitaviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Thermus thermophilus | Complete | High-quality | 100.000 | DTR (high-confidence) | Hukuchivirus | Hukuchivirus P2377 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| GQ413937 | Klebsiella phage KP32 | 41119 | 52.370 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Przondovirus | Przondovirus KP32 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| GQ413938 | Klebsiella phage KP34 | 43809 | 54.073 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Drulisvirus | Drulisvirus KP34 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |