INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FN594518 | Pseudomonas phage phi2 | 43144 | 58.914 | Pseudomonas | Group I | Tunggulvirus | Tunggulvirus | Unclassified | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens SBW25 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tunggulvirus | Tunggulvirus f2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_30 |
| FN667788 | Campylobacter phage CP220 | 177534 | 27.359 | Campylobacter | Group I | Firehammervirus | Firehammervirus | Unclassified | Connertonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Campylobacter sp. | High-quality | High-quality | 99.390 | AAI-based (high-confidence) | Firehammervirus | Firehammervirus CP220 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FN667789 | Campylobacter phage CPt10 | 175720 | 27.337 | Campylobacter | Group I | Firehammervirus | Firehammervirus | Unclassified | Connertonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.490 | AAI-based (high-confidence) | Firehammervirus | Firehammervirus CPt10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FN997652 | Streptococcus phage phi-SsUD.1 | 63748 | 39.713 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus suis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_59 |
| FO818745 | Escherichia phage RCS47 | 115154 | 49.350 | Escherichia | Group I | Punavirus | Punavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Punavirus | Punavirus RCS47 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_52;parA orf_63;antirepressor orf_116;cro orf_117;cro orf_118 |
| FQ312032 | Salmonella phage Vi01 | 157061 | 45.220 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi | High-quality | High-quality | 99.390 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus ViI | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FQ482083 | Erwinia phage phiEa104 | 84565 | 43.830 | Erwinia | Group I | Kolesnikvirus | Kolesnikvirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.670 | AAI-based (high-confidence) | Kolesnikvirus | Kolesnikvirus Ea214 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FQ482084 | Erwinia phage phiEa1H | 45522 | 49.681 | Erwinia | Group I | Eracentumvirus | Eracentumvirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | Eracentumvirus | Eracentumvirus era103 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FQ482085 | Erwinia phage phiEt88 | 47279 | 47.330 | Erwinia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_32;cro orf_52 |
| FQ482086 | Erwinia phage phiEa100 | 45554 | 49.677 | Erwinia | Group I | Eracentumvirus | Eracentumvirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.610 | AAI-based (high-confidence) | Eracentumvirus | Eracentumvirus era103 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |