INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FR667955 | Salmonella phage Vi06 | 38368 | 48.926 | Salmonella | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi | High-quality | High-quality | 96.130 | AAI-based (high-confidence) | Teseptimavirus | Teseptimavirus Vi06 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FR671405 | Streptococcus phage V22 | 37159 | 40.082 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae, strain V22 | High-quality | High-quality | 90.680 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus V22 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_65 |
| FR671406 | Streptococcus phage 040922 | 40104 | 39.734 | Streptococcus | Group I | Spinunavirus | Spinunavirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae, strain 04-0922 | High-quality | High-quality | 95.530 | AAI-based (high-confidence) | Spinunavirus | Spinunavirus sv040922 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_57;cro orf_62;integrase orf_64 |
| FR671407 | Streptococcus phage 34117 | 37636 | 40.384 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae, strain 34117 | High-quality | High-quality | 92.140 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus hv34117 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_49;cro orf_57;integrase orf_65 |
| FR671408 | Streptococcus phage 23782 | 32031 | 40.298 | Streptococcus | Group I | Malkevirus | Malkevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae, strain 23782 | Medium-quality | Genome-fragment | 89.220 | AAI-based (high-confidence) | Malkevirus | Malkevirus mv23782 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_26;antirepressor orf_46;integrase orf_50 |
| FR671409 | Streptococcus phage 11865 | 32602 | 40.228 | Streptococcus | Group I | Malkevirus | Malkevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae, strain 11865 | High-quality | High-quality | 90.200 | AAI-based (high-confidence) | Malkevirus | Malkevirus mv11865 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_26;antirepressor orf_48;integrase orf_52 |
| FR671410 | Streptococcus phage 8140 | 35890 | 40.496 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae, strain 8140 | Medium-quality | Genome-fragment | 87.640 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus hv8140 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_46;cro orf_53 |
| FR671411 | Streptococcus phage 2167 | 36217 | 40.655 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae, strain 2167 | Medium-quality | Genome-fragment | 87.860 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus hv2167 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_54;cro orf_63;integrase orf_66 |
| FR682616 | Roseovarius sp. 217 phage 1 | 74583 | 49.017 | Roseovarius | Group I | Plymouthvirus | Plymouthvirus | Rhodovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Roseovarius sp. 217 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Plymouthvirus | Plymouthvirus RPP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FR687252 | Pantoea phage LIMElight | 44546 | 53.991 | Pantoea | Group I | Limelightvirus | Limelightvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pantoea agglomerans | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Limelightvirus | Limelightvirus limelight | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |