Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
FR667955Salmonella phage Vi063836848.926SalmonellaGroup I TeseptimavirusTeseptimavirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. enterica serovar TyphiHigh-qualityHigh-quality96.130AAI-based (high-confidence) TeseptimavirusTeseptimavirus Vi06Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
FR671405Streptococcus phage V223715940.082StreptococcusGroup I HinxtonvirusHinxtonvirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae, strain V22High-qualityHigh-quality90.680AAI-based (high-confidence) HinxtonvirusHinxtonvirus V22The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_65
FR671406Streptococcus phage 0409224010439.734StreptococcusGroup I SpinunavirusSpinunavirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae, strain 04-0922High-qualityHigh-quality95.530AAI-based (high-confidence) SpinunavirusSpinunavirus sv040922Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperatecro orf_57;cro orf_62;integrase orf_64
FR671407Streptococcus phage 341173763640.384StreptococcusGroup I HinxtonvirusHinxtonvirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae, strain 34117High-qualityHigh-quality92.140AAI-based (high-confidence) HinxtonvirusHinxtonvirus hv34117The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperatecro orf_49;cro orf_57;integrase orf_65
FR671408Streptococcus phage 237823203140.298StreptococcusGroup I MalkevirusMalkevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae, strain 23782Medium-qualityGenome-fragment89.220AAI-based (high-confidence) MalkevirusMalkevirus mv23782The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_26;antirepressor orf_46;integrase orf_50
FR671409Streptococcus phage 118653260240.228StreptococcusGroup I MalkevirusMalkevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae, strain 11865High-qualityHigh-quality90.200AAI-based (high-confidence) MalkevirusMalkevirus mv11865The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_26;antirepressor orf_48;integrase orf_52
FR671410Streptococcus phage 81403589040.496StreptococcusGroup I HinxtonvirusHinxtonvirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae, strain 8140Medium-qualityGenome-fragment87.640AAI-based (high-confidence) HinxtonvirusHinxtonvirus hv8140The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperatecro orf_46;cro orf_53
FR671411Streptococcus phage 21673621740.655StreptococcusGroup I HinxtonvirusHinxtonvirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae, strain 2167Medium-qualityGenome-fragment87.860AAI-based (high-confidence) HinxtonvirusHinxtonvirus hv2167The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateantirepressor orf_54;cro orf_63;integrase orf_66
FR682616Roseovarius sp. 217 phage 17458349.017RoseovariusGroup I PlymouthvirusPlymouthvirusRhodovirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Roseovarius sp. 217High-qualityHigh-quality100.000AAI-based (high-confidence) PlymouthvirusPlymouthvirus RPP1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
FR687252Pantoea phage LIMElight4454653.991PantoeaGroup I LimelightvirusLimelightvirusSlopekvirinaeAutoscriptoviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pantoea agglomeransHigh-qualityHigh-quality100.000AAI-based (high-confidence) LimelightvirusLimelightvirus limelightCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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