INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FM864213 | Streptococcus phage phi-m46.1 | 58144 | 40.068 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pyogenes | Medium-quality | Genome-fragment | 73.510 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_55 |
| FM887021 | Pseudomonas phage SN | 66390 | 55.582 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus SN | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FM897211 | Pseudomonas phage 14-1 | 66235 | 55.593 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus pv141 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FN263372 | Pseudomonas phage phikF77 | 43152 | 62.868 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Phikmvvirus | Phikmvvirus kF77 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FN297812 | Vibrio phage VP585 | 42612 | 50.878 | Vibrio | Group I | Oonoonbavirus | Oonoonbavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Oonoonbavirus | Oonoonbavirus VP85 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_19;parA orf_40 |
| FN391954 | Streptococcus phage PH10 | 31276 | 39.490 | Streptococcus | Group I | Phadecavirus | Phadecavirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus oralis | High-quality | High-quality | 97.610 | AAI-based (high-confidence) | Phadecavirus | Phadecavirus PH10 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_2;cro orf_5;integrase orf_28 |
| FN422398 | Pseudomonas phage LUZ7 | 74901 | 53.218 | Pseudomonas | Group I | Luzseptimavirus | Luzseptimavirus | Migulavirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Luzseptimavirus | Luzseptimavirus LUZ7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FN422399 | Pseudomonas phage LIT1 | 72544 | 55.019 | Pseudomonas | Group I | Litunavirus | Litunavirus | Migulavirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Litunavirus | Litunavirus LIT1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FN436268 | Acaryochloris phage A-HIS1 | 55653 | 47.047 | Acaryochloris | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acaryochloris marina strain MBIC11017 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| FN582354 | Enterobacteria phage phi80 | 23229 | 53.498 | Enterobacteria | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Medium-quality | Genome-fragment | 50.780 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic |