INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FJ937737 | Burkholderia phage BcepIL02 | 62715 | 66.203 | Burkholderia | Group I | Lessievirus | Lessievirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cenocepacia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lessievirus | Lessievirus bcepil02 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_4 |
| FJ965538 | Streptococcus phage 5093 | 37184 | 38.030 | Streptococcus | Group I | Vansinderenvirus | Vansinderenvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus CSK939 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vansinderenvirus | Vansinderenvirus 5093 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_8;integrase orf_47;cro orf_48;cro orf_49;cro orf_50;antirepressor orf_52;cro orf_53 |
| FJ973624 | Mycobacterium phage Angel | 41441 | 66.690 | Mycobacterium | Group I | Liefievirus | Liefievirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.310 | AAI-based (high-confidence) | Liefievirus | Liefievirus halo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32 |
| FJ982340 | Burkholderia phage KS9 | 39896 | 60.680 | Burkholderia | Group I | Stanholtvirus | Stanholtvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pyrrocinia strain LMG 21824 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1 |
| FM163528 | Streptococcus phage PH15 | 39136 | 40.507 | Streptococcus | Group I | Aliceevansviridae | Unclassified | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus gordonii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1 |
| FM164764 | Stygiolobus rod-shaped virus | 28096 | 29.275 | Stygiolobus | Group I | Azorudivirus | Azorudivirus | Unclassified | Rudiviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Unspecified | Complete | High-quality | 100.000 | ITR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| FM180578 | Enterobacteria phage 2851 | 57248 | 51.053 | Enterobacteria | Group I | Pankowvirus | Pankowvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | E. coli O157:H7 strain CB2851 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pankowvirus | Pankowvirus pv2851 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_23;cro orf_24;antirepressor orf_37;antirepressor orf_73 |
| FM201281 | Pseudomonas phage LBL3 | 64427 | 55.469 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 97.550 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus LBL3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FM201282 | Pseudomonas phage LMA2 | 66530 | 55.617 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus LMA2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| FM207411 | Synechococcus phage S-RSM4 | 194454 | 41.120 | Synechococcus | Group I | Gibbetvirus | Gibbetvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gibbetvirus | Gibbetvirus rsm4 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |