INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MK433279	Mycobacterium phage Kareem	41901	66.562	Mycobacterium	Group I	Liefievirus	Liefievirus	Gclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.370	AAI-based (high-confidence)	Liefievirus	Liefievirus halo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_33
MK433577	Klebsiella phage ST512-KPC3phi13.6	39643	52.758	Klebsiella	Group I	Gegevirus	Gegevirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae ST512-KPC3	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gegevirus	Gegevirus ST437OXA245phi41	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_47
MK433578	Klebsiella phage ST15-OXA48phi14.1	33839	52.747	Klebsiella	Group I	Gegavirus	Gegavirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae ST15-OXA48	High-quality	High-quality	96.270	AAI-based (high-confidence)	Gegavirus	Gegavirus ST15OXA48phi141	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_2
MK433579	Klebsiella phage ST11-OXA48phi15.1	36137	51.748	Klebsiella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae ST11-OXA48	High-quality	High-quality	90.020	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_3;cro orf_18
MK433580	Klebsiella phage ST11-OXA48phi15.3	33326	51.470	Klebsiella	Group I	Kapieceevirus	Kapieceevirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae ST11-OXA48	High-quality	High-quality	95.000	AAI-based (high-confidence)	Kapieceevirus	Kapieceevirus ST512KPC3phi132	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MK433581	Klebsiella phage ST258-KPC3phi16.1	39643	52.758	Klebsiella	Group I	Gegevirus	Gegevirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae ST258-KPC3	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gegevirus	Gegevirus ST437OXA245phi41	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_47
MK433582	Klebsiella phage ST258-KPC3phi16.2	33326	51.455	Klebsiella	Group I	Kapieceevirus	Kapieceevirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae ST258-KPC3	High-quality	High-quality	95.000	AAI-based (high-confidence)	Kapieceevirus	Kapieceevirus ST512KPC3phi132	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MK433583	Klebsiella phage ST899-OXA48phi17.2	17998	50.606	Klebsiella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae ST899-OXA48	Medium-quality	Genome-fragment	56.010	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
MK443264	Pseudomonas phage ITTPL	92730	49.424	Pseudomonas	Group I	Pakpunavirus	Pakpunavirus	Skurskavirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	99.700	AAI-based (high-confidence)	Pakpunavirus	Pakpunavirus ITTPL	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK443266	Pseudomonas phage RSP	63016	56.051	Pseudomonas	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic