INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK448228 | Klebsiella phage ST15-VIM1phi2.1 | 46342 | 53.586 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST15-VIM1 | High-quality | High-quality | 98.720 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_70 |
| MK448230 | Klebsiella phage ST16-OXA48phi5.2 | 47305 | 53.791 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST16-OXA48 | High-quality | High-quality | 97.350 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_4 |
| MK448231 | Klebsiella phage ST101-KPC2phi6.1 | 48131 | 52.602 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST101-KPC2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_17 |
| MK448232 | Klebsiella phage ST147-VIM1phi7.2 | 34200 | 51.743 | Klebsiella | Group I | Vimivirus | Vimivirus | Unclassified | Pituviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST147-VIM1 | High-quality | High-quality | 96.270 | AAI-based (high-confidence) | Vimivirus | Vimivirus ST147VIM1phi72 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_8 |
| MK448233 | Klebsiella phage ST11-VIM1phi8.1 | 42666 | 52.862 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST11-VIM1 | High-quality | High-quality | 95.510 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_2;cro orf_14 |
| MK448234 | Klebsiella phage ST11-VIM1phi8.2 | 48230 | 52.650 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST11-VIM1 | Medium-quality | Genome-fragment | 71.700 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_55 |
| MK448235 | Klebsiella phage ST512-KPC3phi13.1 | 42666 | 52.862 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST512-KPC3 | High-quality | High-quality | 95.510 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_2;cro orf_14 |
| MK448236 | Klebsiella phage ST899-OXA48phi17.1 | 35476 | 51.643 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klesiella pneumoniae ST899-OXA48 | Medium-quality | Genome-fragment | 82.670 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK448237 | Klebsiella phage ST974-OXA48phi18.2 | 51967 | 52.851 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST974-OXA48 | Medium-quality | Genome-fragment | 78.600 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_9 |
| MK448665 | Streptococcus phage Javan1 | 38191 | 40.098 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus acidominimus ATCC_51725 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;cro orf_9 |